Macromolecule Content

Total Structure Weight: 3599.21 kDa
Atom Count: 255780
Modelled Residue Count: 31620
Deposited Residue Count: 31620
Unique protein chains: 1

6U0R

Cryo-EM structure of the chimeric vector AAV2.7m8

DOI: 10.2210/pdb6U0R/pdb
EMDataResource: EMD-20609

Classification: VIRUS
Organism(s): Adeno-associated virus - 2
Expression System: Spodoptera frugiperda
Mutation(s): No

Deposited: 2019-08-14 Released: 2020-08-19
Deposition Author(s): Agbandje-McKenna, M., Bennett, A.
Funding Organization(s): National Institutes of Health/National Center for Research Resources (NIH/NCRR)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM structure of the chimeric vector AAV2.7m8

Agbandje-McKenna, M., Bennett, A.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein VP1	1, 2, 3, 4, 5, 6, 7, 8,	1, 2, 3, 4, 5, 6, 7, 8, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w, x, y, z	527	Adeno-associated virus - 2	Mutation(s): 0 Gene Names: VP1
Find proteins for P03135 (Adeno-associated virus 2 (isolate Srivastava/1982)) Explore P03135 Go to UniProtKB: P03135
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
DA Query on DA Download Ideal Coordinates CCD File SDF format, chain AC [S] SDF format, chain AD [s] SDF format, chain BC [T] SDF format, chain BD [t] SDF format, chain CC [U] SDF format, chain CD [u] SDF format, chain DC [V] SDF format, chain DD [v] SDF format, chain EC [W] SDF format, chain ED [w] SDF format, chain FC [X] SDF format, chain FD [x] SDF format, chain GC [Y] SDF format, chain GD [y] SDF format, chain HC [Z] SDF format, chain HD [z] SDF format, chain IB [A] SDF format, chain IC [a] SDF format, chain ID [1] SDF format, chain JB [B] SDF format, chain JC [b] SDF format, chain JD [2] SDF format, chain KB [C] SDF format, chain KC [c] SDF format, chain KD [3] SDF format, chain LB [D] SDF format, chain LC [d] SDF format, chain LD [4] SDF format, chain MB [E] SDF format, chain MC [e] SDF format, chain MD [5] SDF format, chain NB [F] SDF format, chain NC [f] SDF format, chain ND [6] SDF format, chain OB [G] SDF format, chain OC [g] SDF format, chain OD [7] SDF format, chain PB [H] SDF format, chain PC [h] SDF format, chain PD [8] SDF format, chain QB [I] SDF format, chain QC [i] SDF format, chain RB [J] SDF format, chain RC [j] SDF format, chain SB [K] SDF format, chain SC [k] SDF format, chain TB [L] SDF format, chain TC [l] SDF format, chain UB [M] SDF format, chain UC [m] SDF format, chain VB [N] SDF format, chain VC [n] SDF format, chain WB [O] SDF format, chain WC [o] SDF format, chain XB [P] SDF format, chain XC [p] SDF format, chain YB [Q] SDF format, chain YC [q] SDF format, chain ZB [R] SDF format, chain ZC [r] MOL2 format, chain AC [S] MOL2 format, chain AD [s] MOL2 format, chain BC [T] MOL2 format, chain BD [t] MOL2 format, chain CC [U] MOL2 format, chain CD [u] MOL2 format, chain DC [V] MOL2 format, chain DD [v] MOL2 format, chain EC [W] MOL2 format, chain ED [w] MOL2 format, chain FC [X] MOL2 format, chain FD [x] MOL2 format, chain GC [Y] MOL2 format, chain GD [y] MOL2 format, chain HC [Z] MOL2 format, chain HD [z] MOL2 format, chain IB [A] MOL2 format, chain IC [a] MOL2 format, chain ID [1] MOL2 format, chain JB [B] MOL2 format, chain JC [b] MOL2 format, chain JD [2] MOL2 format, chain KB [C] MOL2 format, chain KC [c] MOL2 format, chain KD [3] MOL2 format, chain LB [D] MOL2 format, chain LC [d] MOL2 format, chain LD [4] MOL2 format, chain MB [E] MOL2 format, chain MC [e] MOL2 format, chain MD [5] MOL2 format, chain NB [F] MOL2 format, chain NC [f] MOL2 format, chain ND [6] MOL2 format, chain OB [G] MOL2 format, chain OC [g] MOL2 format, chain OD [7] MOL2 format, chain PB [H] MOL2 format, chain PC [h] MOL2 format, chain PD [8] MOL2 format, chain QB [I] MOL2 format, chain QC [i] MOL2 format, chain RB [J] MOL2 format, chain RC [j] MOL2 format, chain SB [K] MOL2 format, chain SC [k] MOL2 format, chain TB [L] MOL2 format, chain TC [l] MOL2 format, chain UB [M] MOL2 format, chain UC [m] MOL2 format, chain VB [N] MOL2 format, chain VC [n] MOL2 format, chain WB [O] MOL2 format, chain WC [o] MOL2 format, chain XB [P] MOL2 format, chain XC [p] MOL2 format, chain YB [Q] MOL2 format, chain YC [q] MOL2 format, chain ZB [R] MOL2 format, chain ZC [r]	1, 2, 3, 4, 5, 6, 7, 8, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w, x, y, z	2'-DEOXYADENOSINE-5'-MONOPHOSPHATE C₁₀ H₁₄ N₅ O₆ P KHWCHTKSEGGWEX-RRKCRQDMSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.91 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Deposited Date: 2019-08-14
Released Date: 2020-08-19

Deposition Author(s):

Agbandje-McKenna, M.

Funding Organization	Location	Grant Number
National Institutes of Health/National Center for Research Resources (NIH/NCRR)	United States	R01 GM109524

Revision History (Full details and data files)

Version 1.0: 2020-08-19
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.