6PR5

Cryo-EM structure of HzTransib strand transfer complex (STC)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.3 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structures of a RAG-like transposase during cut-and-paste transposition

Liu, C.Yang, Y.Schatz, D.G.

(2019) Nature --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DNA-mediated transposase
A, E
497Helicoverpa zeaMutation(s): 0 
Find proteins for B0F0C5 (Helicoverpa zea)
Go to UniProtKB:  B0F0C5
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(*GP*AP*TP*CP*TP*GP*GP*CP*CP*TP*AP*GP*AP*TP*CP*TP*CP*A)-3')B18Helicoverpa zea
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (5'-D(P*CP*AP*CP*GP*GP*TP*GP*GP*AP*TP*CP*GP*AP*AP*AP*A)-3')C,G16Helicoverpa zea
Entity ID: 4
MoleculeChainsLengthOrganism
DNA (30-MER)D30Helicoverpa zea
Entity ID: 5
MoleculeChainsLengthOrganism
DNA (5'-D(P*TP*TP*TP*TP*CP*GP*AP*TP*C)-3')F9Helicoverpa zea
Entity ID: 6
MoleculeChainsLengthOrganism
DNA (39-MER)H39Helicoverpa zea
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A, E
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, E
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.3 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited States1R01AI137079

Revision History 

  • Version 1.0: 2019-10-09
    Type: Initial release