Download Mendeley2.1 Angstrom structure of wild type Glyoxylate/Hydroxypyruvate reductase A from Escherichia Coli in complex with glyoxylate and NADP
Vuksanovic, N.To be published.
6OXN
2.6 Angstrom structure of W45F/H46S Glyoxylate/Hydroxypyruvate reductase A from Escherichia Coli in complex with glyoxylate and NADP
- PDB DOI: https://doi.org/10.2210/pdb6OXN/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Escherichia coli BL21(DE3)
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2019-05-13 Released: 2020-05-20
- Funding Organization(s): National Science Foundation (NSF, United States)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.61 Å
- R-Value Free: 0.189
- R-Value Work: 0.152
- R-Value Observed: 0.155
wwPDB Validation 3D Report Full Report
Currently 6OXN does not have a validation slider image.
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glyoxylate/hydroxypyruvate reductase A | 318 | Escherichia coli BL21(DE3) | Mutation(s): 2 Gene Names: ghrA, ECBD_2566 EC: 1.1.1.79 (PDB Primary Data), 1.1.1.81 (PDB Primary Data) |  | |
UniProt | |||||
Find proteins for P75913 (Escherichia coli (strain K12)) Explore P75913 Go to UniProtKB: P75913 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P75913 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAP Query on NAP | C [auth A] | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H28 N7 O17 P3 XJLXINKUBYWONI-NNYOXOHSSA-N |  | ||
| GOL Query on GOL | B [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| GLV Query on GLV | D [auth A] | GLYOXYLIC ACID C2 H2 O3 HHLFWLYXYJOTON-UHFFFAOYSA-N |  | ||
| NA Query on NA | E [auth A], F [auth A], G [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.61 Å
- R-Value Free: 0.189
- R-Value Work: 0.152
- R-Value Observed: 0.155
- Space Group: P 65 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 158.96 | α = 90 |
| b = 158.96 | β = 90 |
| c = 94.54 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Structure Validation
Currently 6OXN does not have a validation slider image.
Entry History & Funding Information
Deposition Data
- Released Date: 2020-05-20 Deposition Author(s): Vuksanovic, N., Silvaggi, N.R.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Science Foundation (NSF, United States) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2020-05-20
Type: Initial release - Version 1.1: 2020-06-17
Changes: Structure summary - Version 1.2: 2023-10-11
Changes: Data collection, Database references, Derived calculations, Refinement description
