6M7Y

Dehydratase, NisB, bound to a non-eliminable substrate analog


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.794 Å
  • R-Value Free: 0.270 
  • R-Value Work: 0.185 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Characterization of Glutamyl-tRNA Dependent Dehydratases using Non-Reactive Substrate Mimics

Bothwell, I.R.Cogan, D.P.Kim, T.Reinhardt, C.van der Donk, W.A.Nair, S.K.

(2019) Proc.Natl.Acad.Sci.USA --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nisin biosynthesis protein NisB
A, B
996Lactococcus lactis subsp. lactisMutation(s): 1 
Gene Names: nisB
Find proteins for P20103 (Lactococcus lactis subsp. lactis)
Go to UniProtKB:  P20103
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Lantibiotic
C, D
34Lactococcus lactisMutation(s): 4 
Gene Names: nisZ
Find proteins for Q7BB86 (Lactococcus lactis)
Go to UniProtKB:  Q7BB86
Small Molecules
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
J9A
Query on J9A
C, D
L-peptide linkingC8 H15 N3 O5

--

MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.794 Å
  • R-Value Free: 0.270 
  • R-Value Work: 0.185 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 99.644α = 90.00
b = 107.143β = 109.57
c = 135.438γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
HKL-2000data reduction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-08-14
    Type: Initial release