6LU7

The crystal structure of COVID-19 main protease in complex with an inhibitor N3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.16 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.202 

wwPDB Validation 3D Report Full Report


This is version 2.4 of the entry. See complete history

Literature

Structure of Mpro from COVID-19 virus and discovery of its inhibitors.

Jin, Z.Du, X.Xu, Y.Deng, Y.Liu, M.Zhao, Y.Zhang, B.Li, X.Zhang, L.Peng, C.Duan, Y.Yu, J.Wang, L.Yang, K.Liu, F.Jiang, R.Yang, X.You, T.Liu, X.Yang, X.Bai, F.Liu, H.Liu, X.Guddat, L.Xu, W.Xiao, G.Qin, C.Shi, Z.Jiang, H.Rao, Z.Yang, H.

(2020) Biorxiv --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
SARS-CoV-2 main protease
A
306Bat SARS-like coronavirusMutation(s): 0 
Find proteins for A0A2R3SV02 (Bat SARS-like coronavirus)
Go to UniProtKB:  A0A2R3SV02
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]ALANYL-L-VALYL-N~1~-((1R,2Z)-4-(BENZYLOXY)-4-OXO-1-{[(3R)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE
C
6N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.16 Å
  • R-Value Free: 0.235 
  • R-Value Work: 0.202 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 97.931α = 90.00
b = 79.477β = 114.55
c = 51.803γ = 90.00
Software Package:
Software NamePurpose
xia2data reduction
PHENIXrefinement
xia2data scaling
PDB_EXTRACTdata extraction
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2020-02-05
    Type: Initial release
  • Version 2.0: 2020-02-12
    Type: Coordinate replacement, Advisory, Atomic model, Data collection, Database references, Derived calculations, Refinement description, Structure summary
  • Version 2.1: 2020-02-19
    Type: Database references, Structure summary
  • Version 2.2: 2020-02-26
    Type: Data collection
  • Version 2.3: 2020-03-11
    Type: Source and taxonomy, Structure summary
  • Version 2.4: 2020-03-18
    Type: Database references