6KCR

X-ray structure of the MtlR-HPr complex from Escherichia coli


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.241 
  • R-Value Observed: 0.243 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural insight into glucose repression of the mannitol operon.

Choe, M.Min, H.Park, Y.H.Kim, Y.R.Woo, J.S.Seok, Y.J.

(2019) Sci Rep 9: 13930-13930

  • DOI: https://doi.org/10.1038/s41598-019-50249-2
  • Primary Citation of Related Structures:  
    6KCR

  • PubMed Abstract: 

    Carbon catabolite repression is a regulatory mechanism to ensure sequential utilization of carbohydrates and is usually accomplished by repression of genes for the transport and metabolism of less preferred carbon compounds by a more preferred one. Although glucose and mannitol share the general components, enzyme I and HPr, of the phosphoenolpyruvate-dependent phosphotransferase system (PTS) for their transport, glucose represses the transport and metabolism of mannitol in a manner dependent on the mannitol operon repressor MtlR in Escherichia coli. In a recent study, we identified the dephosphorylated form of HPr as a regulator determining the glucose preference over mannitol by interacting with and augmenting the repressor activity of MtlR in E. coli. Here, we determined the X-ray structure of the MtlR-HPr complex at 3.5 Å resolution to understand how phosphorylation of HPr impedes its interaction with MtlR. The phosphorylation site (His15) of HPr is located close to Glu108 and Glu140 of MtlR and phosphorylation at His15 causes electrostatic repulsion between the two proteins. Based on this structural insight and comparative sequence analyses, we suggest that the determination of the glucose preference over mannitol solely by the MtlR-HPr interaction is conserved within  the Enterobacteriaceae family.


  • Organizational Affiliation

    School of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, 00826, Korea.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Mannitol operon repressor
A, C
201Escherichia coli K-12Mutation(s): 0 
Gene Names: mtlRb3601JW3575
UniProt
Find proteins for P0AF10 (Escherichia coli (strain K12))
Explore P0AF10 
Go to UniProtKB:  P0AF10
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0AF10
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Phosphocarrier protein HPr
B, D
85Escherichia coli K-12Mutation(s): 0 
Gene Names: ptsHhprb2415JW2408
UniProt
Find proteins for P0AA04 (Escherichia coli (strain K12))
Explore P0AA04 
Go to UniProtKB:  P0AA04
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0AA04
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.241 
  • R-Value Observed: 0.243 
  • Space Group: I 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 97.36α = 90
b = 122.317β = 90
c = 147.533γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (Korea)Korea, Republic OfNRF-2018R1A5A1025077
National Research Foundation (Korea)Korea, Republic Of2019R1A2C2004143

Revision History  (Full details and data files)

  • Version 1.0: 2019-10-09
    Type: Initial release
  • Version 1.1: 2023-11-22
    Changes: Data collection, Database references, Refinement description