6K6N

Crystal structure of SIVmac239 Nef protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0002 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.195 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of SIVmac239 Nef protein

Hirao, K.Andrews, S.Kuroki, K.Kusaka, H.Tadokoro, T.Kita, S.Ose, T.Rowland-Jones, S.Maenaka, K.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein Nef
A
176Simian immunodeficiency virusMutation(s): 0 
Gene Names: nef
Find proteins for Q203Y4 (Simian immunodeficiency virus)
Go to UniProtKB:  Q203Y4
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0002 Å
  • R-Value Free: 0.241 
  • R-Value Work: 0.195 
  • Space Group: P 65 2 2
Unit Cell:
Length (Å)Angle (°)
a = 72.531α = 90.00
b = 72.531β = 90.00
c = 111.087γ = 120.00
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PDB_EXTRACTdata extraction
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of ScienceJapan15H02384
Japan Society for the Promotion of ScienceJapan22121007
Japan Society for the Promotion of ScienceJapanStrategic Young Researcher Overseas Visits Program for Accelerating Brain Circulation
Japan Agency for Medical Research and Development (AMED)Japan18am0101093j0002
Japan Agency for Medical Research and Development (AMED)Japan18ae0101047h
Japan Science and TechnologyJapanSupport Program for Implementation of New Equipment Sharing System

Revision History 

  • Version 1.0: 2020-03-25
    Type: Initial release