6IEA

Structure of RVFV Gn and human monoclonal antibody R13


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.181 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Neutralization mechanism of human monoclonal antibodies against Rift Valley fever virus.

Wang, Q.Ma, T.Wu, Y.Chen, Z.Zeng, H.Tong, Z.Gao, F.Qi, J.Zhao, Z.Chai, Y.Yang, H.Wong, G.Bi, Y.Wu, L.Shi, R.Yang, M.Song, J.Jiang, H.An, Z.Wang, J.Yilma, T.D.Shi, Y.Liu, W.J.Liang, M.Qin, C.Gao, G.F.Yan, J.

(2019) Nat Microbiol --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
NSmGnGc
A
316Rift valley fever virusMutation(s): 0 
Find proteins for H9BSP3 (Rift valley fever virus)
Go to UniProtKB:  H9BSP3
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
R13 L chain
L
218N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
R13 H chain
H
225N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

Download SDF File 
Download CCD File 
L
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.225 
  • R-Value Work: 0.181 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 42.210α = 90.00
b = 97.107β = 96.30
c = 112.504γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina31390432

Revision History 

  • Version 1.0: 2019-04-10
    Type: Initial release