6I60

Structure of alpha-L-rhamnosidase from Dictyoglumus thermophilum


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.743 Å
  • R-Value Free: 0.270 
  • R-Value Work: 0.226 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Biochemical Characterization of the alpha-l-Rhamnosidase DtRha from Dictyoglomus thermophilum: Application to the Selective Derhamnosylation of Natural Flavonoids

Guillotin, L.Kim, H.Traore, Y.Moreaum, P.Lafite, P.Coquoin, V.Nuccio, S.de Vaumas, R.Daniellou, R.

(2019) Acs Omega --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Alpha-rhamnosidase
A, B
944Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12)Mutation(s): 0 
Find proteins for B5YC64 (Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12))
Go to UniProtKB:  B5YC64
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PGE
Query on PGE

Download SDF File 
Download CCD File 
A, B
TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
 Ligand Interaction
AE3
Query on AE3

Download SDF File 
Download CCD File 
A, B
2-(2-ETHOXYETHOXY)ETHANOL
C6 H14 O3
XXJWXESWEXIICW-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.743 Å
  • R-Value Free: 0.270 
  • R-Value Work: 0.226 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 173.220α = 90.00
b = 161.530β = 132.14
c = 124.380γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
XSCALEdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-02-06
    Type: Initial release