6GOZ

Structure of mEos4b in the green long-lived dark state


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.406 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.202 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Trapping of a long-lived dark state in a photoconvertible green to red fluorescent protein reveals frustrated chromophore isomerization.

De Zitter, E.Thedie, D.Ridart, J.Adam, V.Byrdin, M.Levy, B.Demachy, I.Van Meervelt, L.Dedecker, P.Bourgeois, D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Green to red photoconvertible GFP-like protein EosFP
A
259Lobophyllia hemprichiiMutation(s): 0 
Find proteins for Q5S6Z9 (Lobophyllia hemprichii)
Go to UniProtKB:  Q5S6Z9
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
PEG
Query on PEG

Download SDF File 
Download CCD File 
A
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
CR8
Query on CR8
A
L-PEPTIDE LINKINGC17 H16 N5 O4HIS, TYR, GLY
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.406 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.202 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 38.620α = 90.00
b = 57.660β = 90.00
c = 102.400γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
PHENIXphasing
PHENIXrefinement
XSCALEdata scaling
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Research Foundation - FlandersBelgium--
Grenoble Instruct-ERIC CenterFranceUMS 3518 CNRS-CEA-UGA-EMBL

Revision History 

  • Version 1.0: 2019-11-13
    Type: Initial release