6GCS

Cryo-EM structure of respiratory complex I from Yarrowia lipolytica


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.32 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Cryo-EM structure of respiratory complex I at work.

Parey, K.Brandt, U.Xie, H.Mills, D.J.Siegmund, K.Vonck, J.Kuehlbrandt, W.Zickermann, V.

(2018) Elife 7: --

  • DOI: 10.7554/eLife.39213

  • PubMed Abstract: 
  • Mitochondrial complex I has a key role in cellular energy metabolism, generating a major portion of the proton motive force that drives aerobic ATP synthesis. The hydrophilic arm of the L-shaped ~1 MDa membrane protein complex transfers electrons fro ...

    Mitochondrial complex I has a key role in cellular energy metabolism, generating a major portion of the proton motive force that drives aerobic ATP synthesis. The hydrophilic arm of the L-shaped ~1 MDa membrane protein complex transfers electrons from NADH to ubiquinone, providing the energy to drive proton pumping at distant sites in the membrane arm. The critical steps of energy conversion are associated with the redox chemistry of ubiquinone. We report the cryo-EM structure of complete mitochondrial complex I from the aerobic yeast Yarrowia lipolytica both in the deactive form and after capturing the enzyme during steady-state activity. The site of ubiquinone binding observed during turnover supports a two-state stabilization change mechanism for complex I.


    Organizational Affiliation

    Medical School, Institute of Biochemistry II, Goethe University Frankfurt, Frankfurt, Germany.,Department of Molecular Membrane Biology, Max Planck Institute of Biophysics, Frankfurt, Germany.,Centre for Biomolecular Magnetic Resonance, Institute for Biophysical Chemistry, Goethe University Frankfurt, Frankfurt, Germany.,Department of Structural Biology, Max Planck Institute of Biophysics, Frankfurt, Germany.,Radboud Institute for Molecular Life Sciences, Department of Pediatrics, Radboud University Medical Centre, Nijmegen, The Netherlands.,Cluster of Excellence Macromolecular Complexes, Goethe University Frankfurt, Frankfurt, Germany.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
75-KDA PROTEIN (NUAM)
A
728Yarrowia lipolyticaMutation(s): 0 
Gene Names: nuam
EC: 1.6.99.3
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q9UUU3 (Yarrowia lipolytica)
Go to UniProtKB:  Q9UUU3
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
51-KDA PROTEIN (NUBM)
B
488Yarrowia lipolyticaMutation(s): 0 
Gene Names: nubm (NUO51)
EC: 1.6.99.3, 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q9UUU2 (Yarrowia lipolytica)
Go to UniProtKB:  Q9UUU2
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
49-KDA PROTEIN (NUCM)
C
466Yarrowia lipolyticaMutation(s): 0 
Gene Names: nucm
EC: 1.6.99.3
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q9UUU1 (Yarrowia lipolytica)
Go to UniProtKB:  Q9UUU1
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
NIMM SUBUNIT
D
87Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for B5FVD3 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  B5FVD3
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
NUEM SUBUNIT
E
375Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q6C7X4 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  Q6C7X4
Entity ID: 6
MoleculeChainsSequence LengthOrganismDetails
NUFM SUBUNIT
F
144Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q6C4W9 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  Q6C4W9
Entity ID: 7
MoleculeChainsSequence LengthOrganismDetails
30-KDA PROTEIN (NUGM)
G
281Yarrowia lipolyticaMutation(s): 0 
Gene Names: nugm
EC: 1.6.99.3
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q9UUU0 (Yarrowia lipolytica)
Go to UniProtKB:  Q9UUU0
Entity ID: 8
MoleculeChainsSequence LengthOrganismDetails
24-KDA SUBUNIT (NUHM)
H
243Yarrowia lipolyticaMutation(s): 0 
Gene Names: nuhm
EC: 1.6.99.3
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q9UUT9 (Yarrowia lipolytica)
Go to UniProtKB:  Q9UUT9
Entity ID: 9
MoleculeChainsSequence LengthOrganismDetails
TYKY SUBUNIT (NUIM)
I
229Yarrowia lipolyticaMutation(s): 0 
Gene Names: nuim
EC: 1.6.99.3
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q9UUT8 (Yarrowia lipolytica)
Go to UniProtKB:  Q9UUT8
Entity ID: 10
MoleculeChainsSequence LengthOrganismDetails
NUJM SUBUNIT
J
198Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q6C674 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  Q6C674
Entity ID: 11
MoleculeChainsSequence LengthOrganismDetails
PSST SUBUNIT (NUKM)
K
210Yarrowia lipolyticaMutation(s): 0 
Gene Names: nukm
EC: 1.6.99.3
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q9UUT7 (Yarrowia lipolytica)
Go to UniProtKB:  Q9UUT7
Entity ID: 12
MoleculeChainsSequence LengthOrganismDetails
ND4L SUBUNIT (NULM)
L
86Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Gene Names: ND4L
EC: 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q9B6D4 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  Q9B6D4
Entity ID: 13
MoleculeChainsSequence LengthOrganismDetails
NUMM SUBUNIT
M
136Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q6C8J9 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  Q6C8J9
Entity ID: 14
MoleculeChainsSequence LengthOrganismDetails
ACPM1 SUBUNIT
O
109Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q6C926 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  Q6C926
Entity ID: 15
MoleculeChainsSequence LengthOrganismDetails
NB4M SUBUNIT
P
124Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q6CI60 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  Q6CI60
Entity ID: 16
MoleculeChainsSequence LengthOrganismDetails
ACPM2 SUBUNIT
Q
132Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q6C7X2 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  Q6C7X2
Entity ID: 17
MoleculeChainsSequence LengthOrganismDetails
NI2M SUBUNIT
R
109Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q6C9Z1 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  Q6C9Z1
Entity ID: 18
MoleculeChainsSequence LengthOrganismDetails
NESM SUBUNIT
S
159N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 19
MoleculeChainsSequence LengthOrganismDetails
NUPM SUBUNIT
U
172Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q6CGB4 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  Q6CGB4
Entity ID: 20
MoleculeChainsSequence LengthOrganismDetails
NB6M SUBUNIT
W
123Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for B5FVF8 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  B5FVF8
Entity ID: 21
MoleculeChainsSequence LengthOrganismDetails
NUXM SUBUNIT
X
169Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q6C4A6 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  Q6C4A6
Entity ID: 22
MoleculeChainsSequence LengthOrganismDetails
NUYM SUBUNIT
Y
161Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q6CEK9 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  Q6CEK9
Entity ID: 23
MoleculeChainsSequence LengthOrganismDetails
NUZM SUBUNIT
Z
137N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 24
MoleculeChainsSequence LengthOrganismDetails
NIAM SUBUNIT
a
100N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 25
MoleculeChainsSequence LengthOrganismDetails
NEBM SUBUNIT
b
64N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 26
MoleculeChainsSequence LengthOrganismDetails
NB2M SUBUNIT
c
60Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for B5FVE5 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  B5FVE5
Entity ID: 27
MoleculeChainsSequence LengthOrganismDetails
NIDM SUBUNIT
d
92Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for B5RSK3 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  B5RSK3
Entity ID: 28
MoleculeChainsSequence LengthOrganismDetails
NUUM SUBUNIT
e
45N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 29
MoleculeChainsSequence LengthOrganismDetails
NI8M SUBUNIT
f
87Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q6CD73 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  Q6CD73
Entity ID: 30
MoleculeChainsSequence LengthOrganismDetails
NI9M SUBUNIT
g
63Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for B5FVF3 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  B5FVF3
Entity ID: 31
MoleculeChainsSequence LengthOrganismDetails
N7BM SUBUNIT
h
138Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Gene Names: N7BM
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q6CG53 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  Q6CG53
Entity ID: 32
MoleculeChainsSequence LengthOrganismDetails
UNKNOWN SUBUNIT
i
53N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 33
MoleculeChainsSequence LengthOrganismDetails
NB5M SUBUNIT
j
93Yarrowia lipolyticaMutation(s): 0 
Gene Names: nuvm
EC: 1.6.99.3
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q6ZY24 (Yarrowia lipolytica)
Go to UniProtKB:  Q6ZY24
Entity ID: 34
MoleculeChainsSequence LengthOrganismDetails
NUNM SUBUNIT
n
93N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 35
MoleculeChainsSequence LengthOrganismDetails
ND1 SUBUNIT (NU1M)
1
341Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Gene Names: ND1
EC: 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q9B6E8 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  Q9B6E8
Entity ID: 36
MoleculeChainsSequence LengthOrganismDetails
ND2 SUBUNIT (NU2M)
2
469Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Gene Names: ND2
EC: 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q9B6C8 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  Q9B6C8
Entity ID: 37
MoleculeChainsSequence LengthOrganismDetails
ND3 SUBUNIT (NU3M)
3
128Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Gene Names: ND3
EC: 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q9B6C7 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  Q9B6C7
Entity ID: 38
MoleculeChainsSequence LengthOrganismDetails
ND4 SUBUNIT (NU4M)
4
486Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Gene Names: ND4
EC: 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q9B6D6 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  Q9B6D6
Entity ID: 39
MoleculeChainsSequence LengthOrganismDetails
ND5 SUBUNIT (NU5M)
5
655Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Gene Names: ND5
EC: 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q9B6D3 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  Q9B6D3
Entity ID: 40
MoleculeChainsSequence LengthOrganismDetails
ND6 SUBUNIT (NU6M)
6
185Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Gene Names: ND6
EC: 7.1.1.2
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for Q9B6E9 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  Q9B6E9
Entity ID: 41
MoleculeChainsSequence LengthOrganismDetails
NB8M SUBUNIT
8
99Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for B5FVG1 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  B5FVG1
Entity ID: 42
MoleculeChainsSequence LengthOrganismDetails
NIPM SUBUNIT
9
89Yarrowia lipolytica (strain CLIB 122 / E 150)Mutation(s): 0 
Membrane protein
mpstruct
Group: 
TRANSMEMBRANE PROTEINS: ALPHA-HELICAL
Sub Group: 
Electron Transport Chain Complexes: Complex I
Protein: 
Mitochondrial Complex I
Find proteins for B5RSL7 (Yarrowia lipolytica (strain CLIB 122 / E 150))
Go to UniProtKB:  B5RSL7
Small Molecules
Ligands 8 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SF4
Query on SF4

Download SDF File 
Download CCD File 
A, B, I, K
IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
 Ligand Interaction
ZN
Query on ZN

Download SDF File 
Download CCD File 
M
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
ZMP
Query on ZMP

Download SDF File 
Download CCD File 
O
S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate
C25 H49 N2 O8 P S
HDTINWYIVVMRIN-HSZRJFAPSA-N
 Ligand Interaction
CDL
Query on CDL

Download SDF File 
Download CCD File 
g
CARDIOLIPIN
DIPHOSPHATIDYL GLYCEROL; BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL
C81 H156 O17 P2
XVTUQDWPJJBEHJ-KZCWQMDCSA-L
 Ligand Interaction
FMN
Query on FMN

Download SDF File 
Download CCD File 
B
FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
 Ligand Interaction
FES
Query on FES

Download SDF File 
Download CCD File 
A, H
FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
 Ligand Interaction
3PE
Query on 3PE

Download SDF File 
Download CCD File 
1, 4, g
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE
3-SN-PHOSPHATIDYLETHANOLAMINE
C41 H82 N O8 P
LVNGJLRDBYCPGB-LDLOPFEMSA-N
 Ligand Interaction
NDP
Query on NDP

Download SDF File 
Download CCD File 
E
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
UNK
Query on UNK
a, b, e, i, n, S, Z
L-PEPTIDE LINKINGC4 H9 N O2

--

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.32 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-04-19 
  • Released Date: 2018-10-10 
  • Deposition Author(s): Parey, K., Vonck, J.

Funding OrganizationLocationGrant Number
German Research FoundationGermanyEXC 115

Revision History 

  • Version 1.0: 2018-10-10
    Type: Initial release
  • Version 1.1: 2019-07-10
    Type: Data collection, Structure summary