6DXL

Linked amidobenzimidazole STING agonist


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.284 
  • R-Value Work: 0.249 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Stimulator of interferon protein
A, B
191Homo sapiensMutation(s): 0 
Gene Names: STING (LOC340061)
Find proteins for A0A2R3XZB7 (Homo sapiens)
Go to UniProtKB:  A0A2R3XZB7
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A, B
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
HG4
Query on HG4

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Download CCD File 
A
1,1'-(butane-1,4-diyl)bis{2-[(1-ethyl-3-methyl-1H-pyrazole-5-carbonyl)amino]-1H-benzimidazole-5-carboxamide}
C34 H38 N12 O4
ICZSAXDKFXTSGL-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.284 
  • R-Value Work: 0.249 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 60.140α = 90.00
b = 73.034β = 96.08
c = 60.275γ = 90.00
Software Package:
Software NamePurpose
MOLREPphasing
HKL-2000data reduction
SCALEPACKdata scaling
PDB_EXTRACTdata extraction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-06-29 
  • Released Date: 2018-11-07 
  • Deposition Author(s): Concha, N.O.

Revision History 

  • Version 1.0: 2018-11-07
    Type: Initial release