6C9C

Crystal structure of LpxC from Pseudomonas aeruginosa in complex with racemic ligand PT803


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.162 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of LpxC from Pseudomonas aeruginosa in complex with ligand PT803

Delker, S.L.Mayclin, S.J.Phan, J.N.Abendroth, J.Lorimer, D.Edwards, T.E.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
UDP-3-O-acyl-N-acetylglucosamine deacetylase
A
304Pseudomonas aeruginosa (strain UCBPP-PA14)Mutation(s): 1 
Gene Names: lpxC
EC: 3.5.1.108
Find proteins for Q02H34 (Pseudomonas aeruginosa (strain UCBPP-PA14))
Go to UniProtKB:  Q02H34
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
F64
Query on F64

Download SDF File 
Download CCD File 
A
(2S)-4-[4-{4-[(5-chloro-6-methoxypyridin-3-yl)methoxy]phenyl}-2-oxo-3,6-dihydropyridin-1(2H)-yl]-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamide
C24 H28 Cl N3 O7 S
CDFIGPHKVBKXMP-DEOSSOPVSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
EU1
Query on EU1

Download SDF File 
Download CCD File 
A
(2R)-4-[4-{4-[(5-chloro-6-methoxypyridin-3-yl)methoxy]phenyl}-2-oxo-3,6-dihydropyridin-1(2H)-yl]-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamide
C24 H28 Cl N3 O7 S
CDFIGPHKVBKXMP-XMMPIXPASA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.162 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 35.660α = 90.00
b = 79.340β = 92.01
c = 50.920γ = 90.00
Software Package:
Software NamePurpose
MOLREPphasing
XSCALEdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2019-03-13
    Type: Initial release