6BZF

Structure of S. cerevisiae Zip2:Spo16 complex, C2 form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.286 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.196 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

The conserved XPF:ERCC1-like Zip2:Spo16 complex controls meiotic crossover formation through structure-specific DNA binding.

Arora, K.Corbett, K.D.

(2018) Nucleic Acids Res. --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Sporulation-specific protein 16
A, E
216Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: SPO16
Find proteins for P17122 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P17122
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Protein ZIP2
B
206Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ZIP2
Find proteins for P53061 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P53061
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Sporulation-specific protein 16
C, G
216Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: SPO16
Find proteins for P17122 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P17122
Entity ID: 4
MoleculeChainsSequence LengthOrganismDetails
Protein ZIP2
D
206Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ZIP2
Find proteins for P53061 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P53061
Entity ID: 5
MoleculeChainsSequence LengthOrganismDetails
Protein ZIP2
F, H
206Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Mutation(s): 0 
Gene Names: ZIP2
Find proteins for P53061 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Go to UniProtKB:  P53061
Small Molecules
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
M0H
Query on M0H
B, D, F, H
L-PEPTIDE LINKINGC4 H9 N O3 SCYS
MLY
Query on MLY
A, B, D, E, F, H
L-PEPTIDE LINKINGC8 H18 N2 O2LYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.286 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.196 
  • Space Group: C 1 2 1
  • Diffraction Data DOI: 
    10.15785/SBGRID/538 SBGrid
Unit Cell:
Length (Å)Angle (°)
a = 169.402α = 90.00
b = 63.589β = 90.60
c = 199.043γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
Aimlessdata scaling
PHENIXrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesR01 GM104141

Revision History 

  • Version 1.0: 2018-02-14
    Type: Initial release
  • Version 1.1: 2018-08-15
    Type: Data collection, Database references
  • Version 1.2: 2019-02-20
    Type: Data collection, Database references