Macromolecule Content

Total Structure Weight: 35539.77
Atom Count: 2453
Residue Count: 307
Unique protein chains: 1

6B8Y

TGF-BETA RECEPTOR TYPE 1 KINASE DOMAIN (T204D) IN COMPLEX WITH N-(3-fluoropyridin-4-yl)-2-[6-(trifluoromethyl)pyridin-2-yl]-7H-pyrrolo[2,3-d]pyrimidin-4-amine

DOI: 10.2210/pdb6B8Y/pdb

Classification: TRANSFERASE/TRANSFERASE inhibitor
Organism(s): Homo sapiens
Expression System: Spodoptera frugiperda
Mutation(s): 1

Deposited: 2017-10-09 Released: 2018-02-07
Deposition Author(s): Sheriff, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free: 0.208
R-Value Work: 0.179

wwPDB Validation3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Heterobicyclic inhibitors of transforming growth factor beta receptor I (TGF beta RI).

Harikrishnan, L.S., Warrier, J., Tebben, A.J., Tonukunuru, G., Madduri, S.R., Baligar, V., Mannoori, R., Seshadri, B., Rahaman, H., Arunachalam, P.N., Dikundwar, A.G., Fink, B.E., Fargnoli, J., Fereshteh, M., Fan, Y., Lippy, J., Ho, C.P., Wautlet, B., Sheriff, S., Ruzanov, M., Borzilleri, R.M.

(2018) Bioorg. Med. Chem. 26: 1026-1034

PubMed: 29422332 Search on PubMed

Macromolecules

Find similar proteins by: Sequence | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
TGF-beta receptor type-1	A	307	Homo sapiens	Mutation(s): 1 Gene Names: TGFBR1 (ALK5, SKR4) EC: 2.7.11.30
Find proteins for P36897 (Homo sapiens) Go to Gene View: TGFBR1 Go to UniProtKB: P36897
Protein Feature View Full Protein Feature View for P36897

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram & Interactions	3D Interactions
D0A Query on D0A Download SDF File Download CCD File	A	N-(3-fluoropyridin-4-yl)-2-[6-(trifluoromethyl)pyridin-2-yl]-7H-pyrrolo[2,3-d]pyrimidin-4-amine C₁₇ H₁₀ F₄ N₆ KNTWBIUWHSYQJE-UHFFFAOYSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.65 Å
R-Value Free: 0.208
R-Value Work: 0.179
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length (Å)	Angle (°)
a = 42.110	α = 90.00
b = 77.030	β = 90.00
c = 90.440	γ = 90.00

Software Package:

Software Name	Purpose
Aimless	data scaling
XDS	data reduction
BUSTER	refinement
AMoRE	phasing
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report or Ramachandran Plots

Entry History

Deposition Data

Deposited Date: 2017-10-09
Released Date: 2018-02-07
Deposition Author(s): Sheriff, S.

Revision History

Version 1.0: 2018-02-07
Type: Initial release
Version 1.1: 2018-02-21
Type: Database references

The RCSB PDB is funded by a grant (DBI-1338415) from the National Science Foundation, the National Institutes of Health, and the US Department of Energy.