6AXY

Structure of the V11I/T58A/I124A mutant of the HIV-1 capsid protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.78 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.213 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Identification of a novel element in HIV-1 capsid critical for assembly and maturation

Novikova, M.Gres, A.T.Kirby, K.A.Sarafianos, S.G.Freed, E.O.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
HIV-1 capsid protein
A
231Human immunodeficiency virus 1Mutation(s): 3 
Gene Names: gag
Find proteins for B6DRA0 (Human immunodeficiency virus 1)
Go to UniProtKB:  B6DRA0
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
IOD
Query on IOD

Download SDF File 
Download CCD File 
A
IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.78 Å
  • R-Value Free: 0.260 
  • R-Value Work: 0.213 
  • Space Group: P 6
Unit Cell:
Length (Å)Angle (°)
a = 91.915α = 90.00
b = 91.915β = 90.00
c = 57.919γ = 120.00
Software Package:
Software NamePurpose
Aimlessdata reduction
Aimlessdata scaling
PDB_EXTRACTdata extraction
PHASERphasing
REFMACrefinement
Blu-Icedata collection

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of HealthUnited StatesAI120860

Revision History 

  • Version 1.0: 2018-09-12
    Type: Initial release