6A4M

Structure of urate oxidase from Bacillus subtilis 168


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.223 
  • R-Value Observed: 0.225 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal Structure of Urate Oxidase from Bacillus Subtilis 168

Nayab, A.Moududee, S.A.Shi, Y.Jiang, Y.Gong, Q.

(2019) Crystallogr Rep 64: 1126-1133


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Uric acid degradation bifunctional protein PucLA305Bacillus subtilis subsp. subtilis str. 168Mutation(s): 0 
Gene Names: pucLyunLBSU32450
EC: 4.1.1.97 (PDB Primary Data), 1.7.3.3 (PDB Primary Data)
Find proteins for O32141 (Bacillus subtilis (strain 168))
Explore O32141 
Go to UniProtKB:  O32141
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download CCD File 
A
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.223 
  • R-Value Observed: 0.225 
  • Space Group: P 62 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 133.05α = 90
b = 133.05β = 90
c = 90.227γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Deposited Date: 2018-06-20 
  • Released Date: 2019-06-26 
  • Deposition Author(s): Jiang, Y.Y.

Revision History 

  • Version 1.0: 2019-06-26
    Type: Initial release
  • Version 1.1: 2020-03-11
    Changes: Database references