5Y65

Phosphoglycerate mutase 1 complexed with a small molecule inhibitor KH2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.554 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.198 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Phosphoglycerate mutase 1 complexed with a small molecule inhibitor KH2

Jiang, L.L.Zhou, L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Phosphoglycerate mutase 1
B
262Homo sapiensMutation(s): 0 
Gene Names: PGAM1 (PGAMA)
EC: 5.4.2.11, 5.4.2.4
Find proteins for P18669 (Homo sapiens)
Go to Gene View: PGAM1
Go to UniProtKB:  P18669
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Phosphoglycerate mutase 1
C
262Homo sapiensMutation(s): 0 
Gene Names: PGAM1 (PGAMA)
EC: 5.4.2.11, 5.4.2.4
Find proteins for P18669 (Homo sapiens)
Go to Gene View: PGAM1
Go to UniProtKB:  P18669
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
HKB
Query on HKB

Download SDF File 
Download CCD File 
C
~{N}-[3,4-bis(oxidanyl)-9,10-bis(oxidanylidene)anthracen-2-yl]-4-(dimethylamino)benzenesulfonamide
C22 H18 N2 O6 S
CJPMCWRDXYBEBQ-UHFFFAOYSA-N
 Ligand Interaction
MES
Query on MES

Download SDF File 
Download CCD File 
C
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
NEP
Query on NEP
C
L-PEPTIDE LINKINGC6 H10 N3 O5 PHIS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.554 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.198 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 79.193α = 90.00
b = 82.929β = 90.00
c = 99.797γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data collection
PHASERphasing
HKL-2000data scaling
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-08-10 
  • Released Date: 2018-12-05 
  • Deposition Author(s): Jiang, L.L., Zhou, L.

Funding OrganizationLocationGrant Number
National Science Foundation (China)China21472026

Revision History 

  • Version 1.0: 2018-12-05
    Type: Initial release