5QU8

Crystal Structure of symmetric swapped human Nck SH3.1 domain, 0.93A, orthorhombic form IV


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.93 Å
  • R-Value Free: 0.182 
  • R-Value Work: 0.149 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Domain Swap in the first SH3 domain of human Nck1

Richter, K.Topp, A.Schlatter, D.Rudolph, M.G.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Cytoplasmic protein NCK1
A
87Homo sapiensMutation(s): 0 
Gene Names: NCK1 (NCK)
Find proteins for P16333 (Homo sapiens)
Go to Gene View: NCK1
Go to UniProtKB:  P16333
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.93 Å
  • R-Value Free: 0.182 
  • R-Value Work: 0.149 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 40.100α = 90.00
b = 55.170β = 90.00
c = 27.000γ = 90.00
Software Package:
Software NamePurpose
XSCALEdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
REFMACrefinement
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2019-12-13 
  • Released Date: 2020-02-12 
  • Deposition Author(s): Rudolph, M.G.

Revision History 

  • Version 1.0: 2020-02-12
    Type: Initial release