human 199.54-16 TCR in complex with Melan-A/MART-1 (26-35) peptide and HLA-A2
Exertier, C., Reiser, J.-B., Housset, D.To be published.
Experimental Data Snapshot
Starting Models: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
HLA class I histocompatibility antigen, A-2 alpha chain | A [auth H] | 276 | Homo sapiens | Mutation(s): 0  Gene Names: HLA-A, HLAA | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P04439 (Homo sapiens) Explore P04439  Go to UniProtKB:  P04439 | |||||
PHAROS:  P04439 GTEx:  ENSG00000206503  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04439 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-2-microglobulin | B [auth L] | 100 | Homo sapiens | Mutation(s): 0  Gene Names: B2M, CDABP0092, HDCMA22P | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61769 (Homo sapiens) Explore P61769  Go to UniProtKB:  P61769 | |||||
PHAROS:  P61769 GTEx:  ENSG00000166710  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P61769 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Melanoma antigen recognized by T-cells 1 | C [auth P] | 10 | Homo sapiens | Mutation(s): 0  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q16655 (Homo sapiens) Explore Q16655  Go to UniProtKB:  Q16655 | |||||
PHAROS:  Q16655 GTEx:  ENSG00000120215  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q16655 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
T-cell receptor alpha variable 12-2,T-cell receptor, sp3.4 alpha chain | D [auth A] | 211 | Homo sapiens | Mutation(s): 0  Gene Names: TRAV12-2 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for K7N5N2 (Homo sapiens) Explore K7N5N2  Go to UniProtKB:  K7N5N2 | |||||
Find proteins for A0A075B6T6 (Homo sapiens) Explore A0A075B6T6  Go to UniProtKB:  A0A075B6T6 | |||||
PHAROS:  A0A075B6T6 GTEx:  ENSG00000211789  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Groups | K7N5N2A0A075B6T6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
T-cell receptor beta variable 19,TRB protein | E [auth B] | 251 | Homo sapiens | Mutation(s): 0  Gene Names: TCRBV17S1A1T, TRBV19, TRB | |
UniProt | |||||
Find proteins for A0A5B3 (Homo sapiens) Explore A0A5B3  Go to UniProtKB:  A0A5B3 | |||||
Find proteins for A0A0C4ZKA8 (Homo sapiens) Explore A0A0C4ZKA8  Go to UniProtKB:  A0A0C4ZKA8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Groups | A0A0C4ZKA8A0A5B3 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SCN Query on SCN | F [auth H] | THIOCYANATE ION C N S ZMZDMBWJUHKJPS-UHFFFAOYSA-M | |||
K Query on K | G [auth H], H | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N | |||
CL Query on CL | I [auth H] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 222.077 | α = 90 |
b = 49.284 | β = 97.61 |
c = 96.133 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
XDS | data reduction |
XSCALE | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
French National Research Agency | France | ANR-11-BSV3-0006 |