5N9H

STRUCTURE OF 283-LGNY-286, THE STERIC ZIPPER THAT SUPPORTS THE SELF-ASSOCIATION OF P. STUARTII OMP-PST2 INTO DIMERS OF TRIMERS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.00 Å
  • R-Value Free: 0.096 
  • R-Value Work: 0.081 
  • R-Value Observed: 0.082 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Porin self-association enables cell-to-cell contact in

El-Khatib, M.Nasrallah, C.Lopes, J.Tran, Q.T.Tetreau, G.Basbous, H.Fenel, D.Gallet, B.Lethier, M.Bolla, J.M.Pages, J.M.Vivaudou, M.Weik, M.Winterhalter, M.Colletier, J.P.

(2018) Proc Natl Acad Sci U S A 115: E2220-E2228

  • DOI: https://doi.org/10.1073/pnas.1714582115
  • Primary Citation of Related Structures:  
    4D64, 4D65, 5N9H, 5N9I, 5NXN, 5NXR, 5NXU

  • PubMed Abstract: 

    The gram-negative pathogen Providencia stuartii forms floating communities within which adjacent cells are in apparent contact, before depositing as canonical surface-attached biofilms. Because porins are the most abundant proteins in the outer membrane of gram-negative bacteria, we hypothesized that they could be involved in cell-to-cell contact and undertook a structure-function relationship study on the two porins of P. stuartii , Omp-Pst1 and Omp-Pst2. Our crystal structures reveal that these porins can self-associate through their extracellular loops, forming dimers of trimers (DOTs) that could enable cell-to-cell contact within floating communities. Support for this hypothesis was obtained by studying the porin-dependent aggregation of liposomes and model cells. The observation that facing channels are open in the two porin structures suggests that DOTs could not only promote cell-to-cell contact but also contribute to intercellular communication.


  • Organizational Affiliation

    Institut de Biologie Structurale (IBS), University of Grenoble Alpes (UGA), Centre National de la Recherche Scientifique (CNRS), Commissariat à l'énergie atomique et aux énergies alternatives (CEA), 38000 Grenoble, France.


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PorinA,
B,
C,
D [auth M]
4Providencia stuartiiMutation(s): 0 
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.00 Å
  • R-Value Free: 0.096 
  • R-Value Work: 0.081 
  • R-Value Observed: 0.082 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 4.784α = 90.01
b = 11.546β = 90.01
c = 47.044γ = 90.01
Software Package:
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
SHELXDphasing
SHELXEphasing
PHENIXrefinement
SHELXLphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
French National Research AgencyFranceANR-15-CE18-0005-02

Revision History  (Full details and data files)

  • Version 1.0: 2018-02-21
    Type: Initial release
  • Version 1.1: 2018-03-07
    Changes: Database references
  • Version 1.2: 2018-03-14
    Changes: Database references