5MZR

X-ray structure of the H235Q mutant of GLIC in complex with propofol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.191 
  • R-Value Observed: 0.192 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

X-ray structure of the H235Q mutant of GLIC in complex with propofol

Fourati, Z.Delarue, M.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Proton-gated ion channel
A, B, C, D, E
327Gloeobacter violaceus PCC 7421Mutation(s): 1 
Gene Names: glvIglr4197
Membrane Entity: Yes 
UniProt
Find proteins for Q7NDN8 (Gloeobacter violaceus (strain ATCC 29082 / PCC 7421))
Explore Q7NDN8 
Go to UniProtKB:  Q7NDN8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7NDN8
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 6 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PLC
Query on PLC

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AA [auth C]
BA [auth C]
CA [auth C]
F [auth A]
G [auth A]
AA [auth C],
BA [auth C],
CA [auth C],
F [auth A],
G [auth A],
H [auth A],
JA [auth D],
KA [auth D],
LA [auth D],
S [auth B],
T [auth B],
TA [auth E],
U [auth B],
UA [auth E],
VA [auth E]
DIUNDECYL PHOSPHATIDYL CHOLINE
C32 H65 N O8 P
IJFVSSZAOYLHEE-SSEXGKCCSA-O
LMT
Query on LMT

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GA [auth C]
N [auth A]
O [auth A]
PA [auth D]
Y [auth B]
GA [auth C],
N [auth A],
O [auth A],
PA [auth D],
Y [auth B],
ZA [auth E]
DODECYL-BETA-D-MALTOSIDE
C24 H46 O11
NLEBIOOXCVAHBD-QKMCSOCLSA-N
PFL
Query on PFL

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AB [auth E],
HA [auth C],
Q [auth A],
RA [auth D]
2,6-BIS(1-METHYLETHYL)PHENOL
C12 H18 O
OLBCVFGFOZPWHH-UHFFFAOYSA-N
ACT
Query on ACT

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FA [auth C]
IA [auth D]
M [auth A]
OA [auth D]
P [auth A]
FA [auth C],
IA [auth D],
M [auth A],
OA [auth D],
P [auth A],
QA [auth D],
SA [auth E],
X [auth B],
YA [auth E],
Z [auth C]
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
CL
Query on CL

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DA [auth C]
I [auth A]
J [auth A]
K [auth A]
MA [auth D]
DA [auth C],
I [auth A],
J [auth A],
K [auth A],
MA [auth D],
V [auth B],
WA [auth E]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
NA
Query on NA

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EA [auth C]
L [auth A]
NA [auth D]
R [auth B]
W [auth B]
EA [auth C],
L [auth A],
NA [auth D],
R [auth B],
W [auth B],
XA [auth E]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.191 
  • R-Value Observed: 0.192 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 182.842α = 90
b = 132.989β = 102.83
c = 161.162γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
XDSdata reduction
Aimlessdata scaling
REFMACphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-02-14
    Type: Initial release
  • Version 1.1: 2019-10-16
    Changes: Data collection
  • Version 1.2: 2024-05-08
    Changes: Data collection, Database references