Download MendeleyCrystal structure of Peroxidoxin BcpB from Mycobacterium tuberculosis
Abendroth, J., Mayclin, S.J., Lorimer, D.D., Edwards, T.E.To be published.
5EPF
Crystal structure of Peroxidoxin BcpB from Mycobacterium tuberculosis
- DOI: 10.2210/pdb5EPF/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Mycobacterium tuberculosis H37Rv
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-11-11 Released: 2015-12-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.35 Å
- R-Value Free: 0.174
- R-Value Work: 0.141
- R-Value Observed: 0.142
wwPDB Validation 3D Report Full Report
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Peroxiredoxin | A | 162 | Mycobacterium tuberculosis H37Rv | Mutation(s): 0 Gene Names: LH57_08785, bcpB, bcp1, Rv1608c EC: 1.11.1.24 |  |
Find proteins for P9WID9 (Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)) Explore P9WID9 Go to UniProtKB: P9WID9 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | A | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | Ligand Interaction | |
| EDO Query on EDO | A | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.35 Å
- R-Value Free: 0.174
- R-Value Work: 0.141
- R-Value Observed: 0.142
- Space Group: P 21 21 2
- Diffraction Data DOI: 10.18430/M35EPF Protein Diffraction
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 55.62 | α = 90 |
| b = 72.14 | β = 90 |
| c = 40.17 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| MOLREP | phasing |
| PHENIX | model building |
| Coot | model building |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Deposited Date: 2015-11-11
- Released Date: 2015-12-02 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
