5CNR

Crystal structure-guided design of self-assembling RNA nano triangles

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.59 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.198 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

Crystal-Structure-Guided Design of Self-Assembling RNA Nanotriangles.

Boerneke, M.A., Dibrov, S.M., Hermann, T.

(2016) Angew Chem Int Ed Engl 55: 4097-4100

  • DOI: 10.1002/anie.201600233
  • Primary Citation of Related Structures:  
    5CNR

  • PubMed Abstract: 

    • RNA nanotechnology uses RNA structural motifs to build nanosized architectures that assemble through selective base-pair interactions. Herein, we report the crystal-structure-guided design of highly stable RNA nanotriangles that self-assemble coopera ...

    RNA nanotechnology uses RNA structural motifs to build nanosized architectures that assemble through selective base-pair interactions. Herein, we report the crystal-structure-guided design of highly stable RNA nanotriangles that self-assemble cooperatively from short oligonucleotides. The crystal structure of an 81 nucleotide nanotriangle determined at 2.6 Å resolution reveals the so-far smallest circularly closed nanoobject made entirely of double-stranded RNA. The assembly of the nanotriangle architecture involved RNA corner motifs that were derived from ligand-responsive RNA switches, which offer the opportunity to control self-assembly and dissociation.

    Organizational Affiliation: 

    Center for Drug Discovery Innovation, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA, 92093, USA. tch@ucsd.edu.



Macromolecules
  • Find similar nucleic acids by:  Sequence   |   Structure
    • Entity ID: 1
    MoleculeChainsLengthOrganismImage
    RNA (5'-R(*GP*UP*CP*UP*AP*CP*CP*CP*AP*CP*CP*UP*CP*GP*CP*C)-3')A, E16Senecavirus A
    • Find similar nucleic acids by:  Sequence   |   Structure
      • Entity ID: 2
      MoleculeChainsLengthOrganismImage
      RNA (5'-R(*AP*GP*AP*GP*GP*AP*CP*GP*GP*CP*G)-3')B, F11Senecavirus A
      Small Molecules
      Ligands 1 Unique
      IDChainsName / Formula / InChI Key2D Diagram3D Interactions
      CL
      Query on CL
      Download Ideal Coordinates CCD File 
      B
      		CHLORIDE ION
      Cl
      VEXZGXHMUGYJMC-UHFFFAOYSA-M      		 Ligand Interaction
      Experimental Data & Validation

      Experimental Data

      • Method: X-RAY DIFFRACTION
      • Resolution: 2.59 Å
      • R-Value Free: 0.244 
      • R-Value Work: 0.193 
      • R-Value Observed: 0.198 
      • Space Group: H 3 2
      Unit Cell:
      Length ( Å )Angle ( ˚ )
      a = 59.934α = 90
      b = 59.934β = 90
      c = 262.622γ = 120
      Software Package:
      Software NamePurpose
      PHENIXrefinement
      HKL-2000data reduction
      HKL-2000data scaling

      Structure Validation

      View Full Validation Report


      View more in-depth experimental data

      Entry History & Funding Information

      Deposition Data

      Funding OrganizationLocationGrant Number
      UCSD Academic SenateUnited StatesRM069B

      Revision History 

      • Version 1.0: 2016-03-09
        Type: Initial release
      • Version 1.1: 2016-03-23
        Changes: Database references