Download MendeleyCrystal structure of a TPR-domain containing protein (BDI_1685) from Parabacteroides distasonis ATCC 8503 at 2.26 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
5CD6
Crystal structure of a TPR-domain containing protein (BDI_1685) from Parabacteroides distasonis ATCC 8503 at 2.26 A resolution
- DOI: 10.2210/pdb5CD6/pdb
- Classification: UNKNOWN FUNCTION
- Organism(s): Parabacteroides distasonis ATCC 8503
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2015-07-03 Released: 2015-07-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.26 Å
- R-Value Free: 0.208
- R-Value Work: 0.175
- R-Value Observed: 0.176
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| TPR-domain containing protein | A, B, C | 580 | Parabacteroides distasonis ATCC 8503 | Mutation(s): 0 Gene Names: BDI_1685 |  |
Find proteins for A6LCM3 (Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152)) Explore A6LCM3 Go to UniProtKB: A6LCM3 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | A, B, C | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| CA Query on CA | A, B, C | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A,B,C | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.26 Å
- R-Value Free: 0.208
- R-Value Work: 0.175
- R-Value Observed: 0.176
- Space Group: C 2 2 21
- Diffraction Data DOI: 10.18430/M35CD6 Protein Diffraction
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 103.48 | α = 90 |
| b = 167.48 | β = 90 |
| c = 312.23 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| XSCALE | data scaling |
| SOLVE | phasing |
| BUSTER | refinement |
Entry History
Deposition Data
- Deposited Date: 2015-07-03
- Released Date: 2015-07-29 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2015-07-29
Type: Initial release - Version 1.1: 2018-01-24
Changes: Database references, Derived calculations, Source and taxonomy
