4Z10

Inactive aurone synthase (polyphenol oxidase) co-crystallized with 1,4-resorcinol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.179 
  • R-Value Work: 0.144 
  • R-Value Observed: 0.146 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Inactive aurone synthase (polyphenol oxidase) co-crystallized with 1,4-resorcinol

Molitor, C.Mauracher, S.G.Rompel, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Aurone synthase350Coreopsis grandifloraMutation(s): 0 
UniProt
Find proteins for A0A075DN54 (Coreopsis grandiflora)
Explore A0A075DN54 
Go to UniProtKB:  A0A075DN54
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A075DN54
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Aurone synthase15Coreopsis grandifloraMutation(s): 0 
UniProt
Find proteins for A0A075DN54 (Coreopsis grandiflora)
Explore A0A075DN54 
Go to UniProtKB:  A0A075DN54
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A075DN54
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
RCO
Query on RCO

Download Ideal Coordinates CCD File 
DA [auth D]
EA [auth D]
HA [auth E]
IA [auth E]
N [auth A]
DA [auth D],
EA [auth D],
HA [auth E],
IA [auth E],
N [auth A],
O [auth A],
P [auth A],
S [auth B],
T [auth B],
Y [auth C],
Z [auth C]
RESORCINOL
C6 H6 O2
GHMLBKRAJCXXBS-UHFFFAOYSA-N
GOL
Query on GOL

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AA [auth C]
BA [auth C]
FA [auth D]
Q [auth A]
U [auth B]
AA [auth C],
BA [auth C],
FA [auth D],
Q [auth A],
U [auth B],
V [auth B],
W [auth B]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
CU
Query on CU

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CA [auth D]
GA [auth E]
KA [auth F]
M [auth A]
R [auth B]
CA [auth D],
GA [auth E],
KA [auth F],
M [auth A],
R [auth B],
X [auth C]
COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
ACT
Query on ACT

Download Ideal Coordinates CCD File 
JA [auth K]ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
HS8
Query on HS8
A
C [auth B]
E [auth C]
G [auth D]
I [auth E]
A,
C [auth B],
E [auth C],
G [auth D],
I [auth E],
K [auth F]
L-PEPTIDE LINKINGC6 H10 N3 O5 SHIS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.179 
  • R-Value Work: 0.144 
  • R-Value Observed: 0.146 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 137.1α = 90
b = 137.1β = 90
c = 209.52γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Austrian Science FundAustriaP25217-N28

Revision History  (Full details and data files)

  • Version 1.0: 2016-04-06
    Type: Initial release
  • Version 1.1: 2018-11-21
    Changes: Advisory, Data collection, Derived calculations
  • Version 1.2: 2024-01-10
    Changes: Data collection, Database references, Derived calculations, Refinement description