Download MendeleyCrystal structure of a probable lactoylglutathione lyase from Brucella melitensis in complex with glutathione
Abendroth, J., Clifton, M.C., Lorimer, D.D., Edwards, T.E.To be published.
4Z04
Crystal structure of a probable lactoylglutathione lyase from Brucella melitensis in complex with glutathione
- DOI: 10.2210/pdb4Z04/pdb
- Classification: LYASE
- Organism(s): Brucella abortus 2308
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-03-25 Released: 2015-04-22
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.161
- R-Value Work: 0.134
- R-Value Observed: 0.135
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein | A | 131 | Brucella abortus 2308 | Mutation(s): 0 Gene Names: BAB1_1899, DK47_1237 |  |
Find proteins for Q2YLQ3 (Brucella abortus (strain 2308)) Explore Q2YLQ3 Go to UniProtKB: Q2YLQ3 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GSH Query on GSH | A | GLUTATHIONE C10 H17 N3 O6 S RWSXRVCMGQZWBV-WDSKDSINSA-N |  | Ligand Interaction | |
| MRD Query on MRD | A | (4R)-2-METHYLPENTANE-2,4-DIOL C6 H14 O2 SVTBMSDMJJWYQN-RXMQYKEDSA-N |  | Ligand Interaction | |
| MPD Query on MPD | A | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | Ligand Interaction | |
| ZN Query on ZN | A | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.161
- R-Value Work: 0.134
- R-Value Observed: 0.135
- Space Group: C 1 2 1
- Diffraction Data DOI: 10.18430/M34Z04 Protein Diffraction
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 82.63 | α = 90 |
| b = 39.5 | β = 116.29 |
| c = 41.7 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| MOLREP | phasing |
| BALBES | phasing |
| PHENIX | model building |
| Coot | model building |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Deposited Date: 2015-03-25
- Released Date: 2015-04-22 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
