Download MendeleyCrystal structure of ABC transporter system solute-binding proteins from Aeropyrum pernix K1
Chang, C., Li, H., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)To be published.
4PEV
Crystal structure of ABC transporter system solute-binding proteins from Aeropyrum pernix K1
- DOI: 10.2210/pdb4PEV/pdb
- Classification: SOLUTE-BINDING PROTEIN
- Organism(s): Aeropyrum pernix K1
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2014-04-25 Released: 2014-05-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.58 Å
- R-Value Free: 0.229
- R-Value Work: 0.175
- R-Value Observed: 0.177
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Membrane lipoprotein family protein | A, B, C | 422 | Aeropyrum pernix K1 | Mutation(s): 0 Gene Names: APE_2592.1 |  |
Find proteins for Q9Y8P1 (Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)) Explore Q9Y8P1 Go to UniProtKB: Q9Y8P1 | |||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ADN Query on ADN | A, B, C | ADENOSINE C10 H13 N5 O4 OIRDTQYFTABQOQ-KQYNXXCUSA-N |  | Ligand Interaction | |
| GOL Query on GOL | C | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A,B,C | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.58 Å
- R-Value Free: 0.229
- R-Value Work: 0.175
- R-Value Observed: 0.177
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 70.979 | α = 90 |
| b = 109.601 | β = 90 |
| c = 180.559 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| SCALEPACK | data scaling |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Deposited Date: 2014-04-25
- Released Date: 2014-05-21 Deposition Author(s): Chang, C., Li, H., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)
