4LMQ

Development and Preclinical Characterization of a Humanized Antibody Targeting CXCL12


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.77 Å
  • R-Value Free: 0.301 
  • R-Value Work: 0.253 
  • R-Value Observed: 0.255 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Development and Preclinical Characterization of a Humanized Antibody Targeting CXCL12.

Zhong, C.Wang, J.Li, B.Xiang, H.Ultsch, M.Coons, M.Wong, T.Chiang, N.Y.Clark, S.Clark, R.Quintana, L.Gribling, P.Suto, E.Barck, K.Corpuz, R.Yao, J.Takkar, R.Lee, W.P.Damico-Beyer, L.A.Carano, R.D.Adams, C.Kelley, R.F.Wang, W.Ferrara, N.

(2013) Clin Cancer Res 19: 4433-4445

  • DOI: 10.1158/1078-0432.CCR-13-0943
  • Primary Citation of Related Structures:  
    4LMQ

  • PubMed Abstract: 
  • Our goal was to develop a potent humanized antibody against mouse/human CXCL12. This report summarized its in vitro and in vivo activities.


    Organizational Affiliation

    Genentech, Inc., South San Francisco, California, USA.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Stromal cell-derived factor 1 DF61Homo sapiensMutation(s): 0 
Gene Names: CXCL12SDF1SDF1ASDF1B
Find proteins for P48061 (Homo sapiens)
Explore P48061 
Go to UniProtKB:  P48061
NIH Common Fund Data Resources
PHAROS:  P48061
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
immunoglobulin G1 heavy chain EH221Homo sapiensMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Stromal cell-derived factor 1 IL214Homo sapiensMutation(s): 0 
Gene Names: CXCL12SDF1SDF1ASDF1B
Protein Feature View
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.77 Å
  • R-Value Free: 0.301 
  • R-Value Work: 0.253 
  • R-Value Observed: 0.255 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 64.949α = 90
b = 73.101β = 90.4
c = 106.626γ = 90
Software Package:
Software NamePurpose
Blu-Icedata collection
PHASERphasing
PHENIXrefinement
XDSdata reduction
SCALAdata scaling

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2013-08-14
    Type: Initial release
  • Version 1.1: 2013-08-28
    Changes: Database references
  • Version 1.2: 2018-01-24
    Changes: Structure summary