4GEH

Crystal structure of MST4 dimerization domain complex with PDCD10


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.220 
  • R-Value Observed: 0.222 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural mechanism of CCM3 heterodimerization with GCKIII kinases

Zhang, M.Dong, L.Shi, Z.Jiao, S.Zhang, Z.Zhang, W.Liu, G.Chen, C.Feng, M.Hao, Q.Wang, W.Yin, M.Zhao, Y.Zhang, L.Zhou, Z.

(2013) Structure 21: 680-688

  • DOI: 10.1016/j.str.2013.02.015
  • Primary Citation of Related Structures:  
    4GEH

  • PubMed Abstract: 
  • Mutation of CCM3 causes cerebral cavernous malformations of the vasculature, leading to focal neurological deficits, seizures, and hemorrhagic stroke. CCM3 can heterodimerize with GCKIII kinases (MST3, MST4, and STK25) to regulate cardiovascular developm ...

    Mutation of CCM3 causes cerebral cavernous malformations of the vasculature, leading to focal neurological deficits, seizures, and hemorrhagic stroke. CCM3 can heterodimerize with GCKIII kinases (MST3, MST4, and STK25) to regulate cardiovascular development. Here, we provide direct experimental evidence to prove that CCM3 heterodimerizes with GCKIII in a manner structurally resembling the CCM3 homodimerization. Structural comparison revealed the mechanism and critical residues that drive CCM3-GCKIII heterodimerization versus homodimerization. A flexible linker was identified for CCM3, which mediates a large-scale conformational rotation of the FAT domain relative to the dimerization domain. The conformational flip over of FAT domain removes steric locking in the CCM3 homodimer and allows its disassembly and subsequent heterodimerization with GCKIII. CCM3 forms a stable complex with MST4 in vivo to promote cell proliferation and migration synergistically in a manner dependent on MST4 kinase activity. Collectively, our work offers a structural basis for further functional study.


    Organizational Affiliation

    State Key Laboratory of Cell Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Programmed cell death protein 10 AC207Homo sapiensMutation(s): 0 
Gene Names: PDCD10CCM3TFAR15
Find proteins for Q9BUL8 (Homo sapiens)
Explore Q9BUL8 
Go to UniProtKB:  Q9BUL8
NIH Common Fund Data Resources
PHAROS:  Q9BUL8
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Serine/threonine-protein kinase MST4 BD91Homo sapiensMutation(s): 0 
Gene Names: MST4MASKSTK26
EC: 2.7.11.1
Find proteins for Q9P289 (Homo sapiens)
Explore Q9P289 
Go to UniProtKB:  Q9P289
NIH Common Fund Data Resources
PHAROS:  Q9P289
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.220 
  • R-Value Observed: 0.222 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 75.243α = 90
b = 84.018β = 90
c = 109.679γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
AutoSolphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-04-17
    Type: Initial release
  • Version 1.1: 2013-07-17
    Changes: Database references