New 3-amidinophenylalanine-derived inhibitors of matriptase
Hammami, M., Ruehmann, E., Mauerer, M., Heine, A., Guetschow, M., Klebe, G., Steinmetzer, T.(2012) Medchemcomm 3: 807-813
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
(2012) Medchemcomm 3: 807-813
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Thrombin light chain | L, M | 36 | Homo sapiens | Mutation(s): 0  Gene Names: F2 EC: 3.4.21.5 | ![]() |
Find proteins for P00734 (Homo sapiens) Explore P00734  Go to UniProtKB:  P00734 | |||||
NIH Common Fund Data Resources | |||||
PHAROS:  P00734 GTEx:  ENSG00000180210 | |||||
Protein Feature ViewExpand | |||||
|
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Thrombin heavy chain | G, H | 259 | Homo sapiens | Mutation(s): 0  Gene Names: F2 EC: 3.4.21.5 | ![]() |
Find proteins for P00734 (Homo sapiens) Explore P00734  Go to UniProtKB:  P00734 | |||||
NIH Common Fund Data Resources | |||||
PHAROS:  P00734 GTEx:  ENSG00000180210 | |||||
Protein Feature ViewExpand | |||||
|
Ligands 5 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
0NW Query on 0NW | G, H | 3-[(2S)-3-[4-(2-aminoethyl)piperidin-1-yl]-2-{[(2',4'-dichlorobiphenyl-3-yl)sulfonyl]amino}-3-oxopropyl]benzenecarboximidamide C29 H33 Cl2 N5 O3 S ZLCINVZAICQINL-MHZLTWQESA-N | Ligand Interaction | ||
NAG Query on NAG | G, H | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | Ligand Interaction | ||
PO4 Query on PO4 | G, H | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | Ligand Interaction | ||
GOL Query on GOL | G, H | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | Ligand Interaction | ||
NA Query on NA | G, H | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N | Ligand Interaction |
Modified Residues  1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
TYS Query on TYS | I,J | L-PEPTIDE LINKING | C9 H11 N O6 S | TYR |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 50.242 | α = 97.61 |
b = 50.284 | β = 96.61 |
c = 71.837 | γ = 90.57 |
Software Name | Purpose |
---|---|
MAR345dtb | data collection |
PHASER | phasing |
PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |