Biological Assembly 1  

 3D View: Structure

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Global Symmetry: Cyclic - C3  (3D View)
Global Stoichiometry: Hetero 18-mer - A12B6 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 632498.94 
• Atom Count: 5381 
• Residue Count: 6006 
• Unique protein chains: 2

4A8B

Symmetrized cryo-EM reconstruction of E. coli DegQ 12-mer in complex with lysozymes

• DOI: 10.2210/pdb4A8B/pdb
• EMDataBank: EMD-1982

• Classification: HYDROLASE/HYDROLASE
• Organism(s): Escherichia coli (strain K12), Gallus gallus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): 1 


• Deposited: 2011-11-20 Released: 2012-01-11 
• Deposition Author(s): Malet, H., Canellas, F., Sawa, J., Yan, J., Thalassinos, K., Ehrmann, M., Clausen, T., Saibil, H.R.

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 13 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Newly Folded Substrates Inside the Molecular Cage of the Htra Chaperone Degq

Malet, H., Canellas, F., Sawa, J., Yan, J., Thalassinos, K., Ehrmann, M., Clausen, T., Saibil, H.R.

(2012) Nat.Struct.Mol.Biol. 19: 152

• PubMed: 22245966 
• DOI: 10.1038/nsmb.2210
• Primary Citation of Related Structures:  
  4A9G, 4A8D, 4A8C, 4A8A


• PubMed Abstract: 
  

The HtrA protein family combines chaperone and protease activities and is essential for protein quality control in many organisms. Whereas the mechanisms underlying the proteolytic function of HtrA proteins are well characterized, their chaperone activity remains poorly understood. Here we describe cryo-EM structures of Escherichia coli DegQ in its 12- and 24-mer states in complex with model substrates, providing a structural model of HtrA chaperone action. Up to six lysozyme substrates bind inside the DegQ 12-mer cage and are visualized in a close-to-native state. An asymmetric reconstruction reveals the binding of a well-ordered lysozyme to four DegQ protomers. DegQ PDZ domains are located adjacent to substrate density and their presence is required for chaperone activity. The substrate-interacting regions appear conserved in 12- and 24-mer cages, suggesting a common mechanism of chaperone function.

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Organizational Affiliation: 

Institute of Structural and Molecular Biology, Crystallography, Birkbeck College, London, UK.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details
PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ	A, B, C, D, E, F, G, H, I, J, K, L	436	Escherichia coli (strain K12)	Mutation(s): 1  Gene Names: degQ (hhoA) EC: 3.4.21.107
Find proteins for P39099 (Escherichia coli (strain K12)) Go to UniProtKB:  P39099

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details
LYSOZYME C	M, N, O, P, Q, R	129	Gallus gallus	Mutation(s): 0  Gene Names: LYZ EC: 3.2.1.17
Find proteins for P00698 (Gallus gallus) Go to Gene View: LYZ Go to UniProtKB:  P00698

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 13 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2011-11-20 
• Released Date: 2012-01-11 
• Deposition Author(s): Malet, H., Canellas, F., Sawa, J., Yan, J., Thalassinos, K., Ehrmann, M., Clausen, T., Saibil, H.R.

Revision History 

• Version 1.0: 2012-01-11
  Type: Initial release
• Version 1.1: 2012-02-15
  Type: Other
• Version 1.2: 2017-08-23
  Type: Data collection, Refinement description