3V3O

Crystal structure of TetX2 T280A: an adaptive mutant in complex with tigecycline


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.232 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of TetX2 T280A: an adaptive mutant in complex with tigecycline

Walkiewicz, K.Shamoo, Y.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
TetX2 protein
A, B, C, D
378Bacteroides thetaiotaomicronMutations: E256K, E84K, T270A
Gene Names: tetX2 (tet(X))
Find proteins for Q93L51 (Bacteroides thetaiotaomicron)
Go to UniProtKB:  Q93L51
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
T1C
Query on T1C

Download SDF File 
Download CCD File 
A, B, C, D
TIGECYCLINE
C29 H41 N5 O8
FPZLLRFZJZRHSY-HJYUBDRYSA-P
 Ligand Interaction
FAD
Query on FAD

Download SDF File 
Download CCD File 
A, B, C, D
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.297 
  • R-Value Work: 0.232 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 68.126α = 111.02
b = 80.080β = 89.97
c = 87.238γ = 92.97
Software Package:
Software NamePurpose
HKL-2000data scaling
PDB_EXTRACTdata extraction
JBluIce-EPICSdata collection
PHENIXrefinement
DENZOdata reduction
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-01-30
    Type: Initial release
  • Version 1.1: 2017-11-08
    Type: Refinement description