3REP

Crystal structure of the ILK/alpha-parvin core complex (MnATP)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.204 
  • R-Value Observed: 0.206 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history. 


Literature

Crystal structure of the ILK/alpha-parvin core complex (MnATP)

Fukuda, K., Qin, J.

To be published.

Macromolecules
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Integrin-linked kinase A271Homo sapiensMutation(s): 2 
Gene Names: ILK, ILK1, ILK2
EC: 2.7.11.1
Find proteins for Q13418 (Homo sapiens)
Explore Q13418 
Go to UniProtKB:  Q13418
NIH Common Fund Data Resources
PHAROS:  Q13418
GTEx:  ENSG00000166333
Protein Feature View
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  • Reference Sequence
Find similar proteins by: 
(by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Alpha-parvin B129Homo sapiensMutation(s): 0 
Gene Names: PARVA, MXRA2
Find proteins for Q9NVD7 (Homo sapiens)
Explore Q9NVD7 
Go to UniProtKB:  Q9NVD7
NIH Common Fund Data Resources
PHAROS:  Q9NVD7
GTEx:  ENSG00000197702
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ATP
Query on ATP
Download Ideal Coordinates CCD File 
A
ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N		 Ligand Interaction
MN
Query on MN
Download Ideal Coordinates CCD File 
A
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.204 
  • R-Value Observed: 0.206 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 44.022α = 90
b = 116.28β = 101.53
c = 47.284γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
CNSrefinement
StructureStudiodata collection
d*TREKdata reduction
d*TREKdata scaling
CNSphasing

Structure Validation

View Full Validation Report


View more in-depth experimental data

Entry History 

Deposition Data

  • Deposited Date: 2011-04-04 
  • Released Date: 2011-04-27 
    • Deposition Author(s): Fukuda, K., Qin, J.

Revision History  (Full details and data files)

  • Version 1.0: 2011-04-27
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2019-07-17
    Changes: Data collection, Refinement description