Download MendeleyStructural basis of thrombin-protease-receptor interactions
Gandhi, P.S., Chen, Z., Appelbaum, E., Zapata, F., Di Cera, E.(2011) IUBMB Life 63: 375-382
3QDZ
Crystal structure of the human thrombin mutant D102N in complex with the extracellular fragment of human PAR4.
- DOI: 10.2210/pdb3QDZ/pdb
- Classification: HYDROLASE/HYDROLASE RECEPTOR
- Organism(s): Homo sapiens
- Expression System: Mesocricetus auratus
- Mutation(s): Yes
- Deposited: 2011-01-19 Released: 2011-06-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.364
- R-Value Work: 0.304
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thrombin light chain | A, C | 31 | Homo sapiens | Mutation(s): 0 Gene Names: F2 EC: 3.4.21.5 |  |
Find proteins for P00734 (Homo sapiens) Explore P00734 Go to UniProtKB: P00734 | |||||
NIH Common Fund Data Resources | |||||
PHAROS: P00734 GTEx: ENSG00000180210 | |||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thrombin heavy chain | B, D | 259 | Homo sapiens | Mutation(s): 1 Gene Names: F2 EC: 3.4.21.5 |  |
Find proteins for P00734 (Homo sapiens) Explore P00734 Go to UniProtKB: P00734 | |||||
NIH Common Fund Data Resources | |||||
PHAROS: P00734 GTEx: ENSG00000180210 | |||||
Protein Feature ViewExpand | |||||
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- Find similar proteins by: Sequence | Structure
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Proteinase-activated receptor 4 | E, F | 9 | Homo sapiens | Mutation(s): 0 Gene Names: F2RL3, PAR4 |  |
Find proteins for Q96RI0 (Homo sapiens) Explore Q96RI0 Go to UniProtKB: Q96RI0 | |||||
NIH Common Fund Data Resources | |||||
PHAROS: Q96RI0 GTEx: ENSG00000127533 | |||||
Protein Feature ViewExpand | |||||
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Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.364
- R-Value Work: 0.304
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 91.414 | α = 90 |
| b = 102.876 | β = 90 |
| c = 146.39 | γ = 90 |
| Software Name | Purpose |
|---|---|
| ADSC | data collection |
| MOLREP | phasing |
| CNS | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Deposited Date: 2011-01-19
- Released Date: 2011-06-29 Deposition Author(s): Gandhi, P., Chen, Z., Appelbaum, E., Zapata, F., Di Cera, E.
