Macromolecule Content

Total Structure Weight: 271.76 kDa
Atom Count: 18822
Residue Count: 2198
Unique protein chains: 1

3NZ2

Crystal Structure of Hexapeptide-Repeat containing-Acetyltransferase VCA0836 Complexed with Acetyl Co Enzyme A from Vibrio cholerae O1 biovar eltor

DOI: 10.2210/pdb3NZ2/pdb

Classification: TRANSFERASE
Organism(s): Vibrio cholerae O1 biovar El Tor str. N16961
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2010-07-15 Released: 2010-08-04
Deposition Author(s): Kim, Y., Maltseva, N., Hasseman, J., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.35 Å
R-Value Free: 0.253
R-Value Work: 0.188
R-Value Observed: 0.191

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of Hexapeptide-Repeat containing-Acetyltransferase VCA0836 Complexed with Acetyl Co Enzyme A from Vibrio cholerae O1 biovar eltor

Kim, Y., Maltseva, N., Hasseman, J., Anderson, W.F., Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hexapeptide-repeat containing-acetyltransferase	A, B, C, D, E, F, G, H, I, J, K, L	195	Vibrio cholerae O1 biovar El Tor str. N16961	Mutation(s): 0 Gene Names: VC_A0836
Find proteins for Q9KLB0 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KLB0 Go to UniProtKB: Q9KLB0
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 6 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ACO Query on ACO Download Ideal Coordinates CCD File SDF format, chain CA [F] SDF format, chain GA [H] SDF format, chain IA [I] SDF format, chain JA [I] SDF format, chain M [A] SDF format, chain MA [J] SDF format, chain P [A] SDF format, chain QA [L] SDF format, chain RA [L] SDF format, chain T [C] SDF format, chain W [D] SDF format, chain Y [E] MOL2 format, chain CA [F] MOL2 format, chain GA [H] MOL2 format, chain IA [I] MOL2 format, chain JA [I] MOL2 format, chain M [A] MOL2 format, chain MA [J] MOL2 format, chain P [A] MOL2 format, chain QA [L] MOL2 format, chain RA [L] MOL2 format, chain T [C] MOL2 format, chain W [D] MOL2 format, chain Y [E]	A, C, D, E, F, H, I, J, L	*ACETYL COENZYME A** C₂₃ H₃₈ N₇ O₁₇ P₃ S ZSLZBFCDCINBPY-ZSJPKINUSA-N		Ligand Interaction
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain DA [F] SDF format, chain Q [B] SDF format, chain SA [L] SDF format, chain Z [E] MOL2 format, chain DA [F] MOL2 format, chain Q [B] MOL2 format, chain SA [L] MOL2 format, chain Z [E]	B, E, F, L	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Ligand Interaction
BU1 Query on BU1 Download Ideal Coordinates CCD File SDF format, chain FA [G] SDF format, chain NA [K] MOL2 format, chain FA [G] MOL2 format, chain NA [K]	G, K	1,4-BUTANEDIOL C₄ H₁₀ O₂ WERYXYBDKMZEQL-UHFFFAOYSA-N		Ligand Interaction
ACY Query on ACY Download Ideal Coordinates CCD File SDF format, chain BA [F] SDF format, chain EA [G] SDF format, chain KA [I] SDF format, chain N [A] SDF format, chain O [A] SDF format, chain OA [K] SDF format, chain PA [K] SDF format, chain S [B] SDF format, chain X [D] MOL2 format, chain BA [F] MOL2 format, chain EA [G] MOL2 format, chain KA [I] MOL2 format, chain N [A] MOL2 format, chain O [A] MOL2 format, chain OA [K] MOL2 format, chain PA [K] MOL2 format, chain S [B] MOL2 format, chain X [D]	A, B, D, F, G, I, K	ACETIC ACID C₂ H₄ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-N		Ligand Interaction
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain AA [E] SDF format, chain HA [H] SDF format, chain LA [J] SDF format, chain R [B] SDF format, chain U [C] MOL2 format, chain AA [E] MOL2 format, chain HA [H] MOL2 format, chain LA [J] MOL2 format, chain R [B] MOL2 format, chain U [C]	B, C, E, H, J	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Ligand Interaction
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain V [C] MOL2 format, chain V [C]	C	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Ligand Interaction

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A,B,C,D,E,F,G,H,I,J,K,L	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.35 Å
R-Value Free: 0.253
R-Value Work: 0.188
R-Value Observed: 0.191
Space Group: P 1 2₁ 1
Diffraction Data DOI: 10.18430/M33NZ2 Protein Diffraction

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.316	α = 90
b = 135.801	β = 91.77
c = 120.535	γ = 90

Software Package:

Software Name	Purpose
SBC-Collect	data collection
HKL-3000	data collection
HKL-3000	phasing
MOLREP	phasing
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2010-07-15
Released Date: 2010-08-04

Deposition Author(s):

Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History

Version 1.0: 2010-08-04
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.