Macromolecule Content

Total Structure Weight: 58.22 kDa
Atom Count: 3936
Residue Count: 458
Unique protein chains: 1

3L7U

Crystal structure of human NM23-H1

DOI: 10.2210/pdb3L7U/pdb

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-12-29 Released: 2010-11-10
Deposition Author(s): Han, B.G., Min, K., Lee, B.I., Lee, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.242
R-Value Work: 0.224
R-Value Observed: 0.224

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Refined Structure of Human NM23-H1 from a Hexagonal Crystal

Han, B.G., Min, K., Lee, B.I., Lee, S.

(2010) Bull Korean Chem Soc 31: 1397-1399

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleoside diphosphate kinase A	A, B, C	172	Homo sapiens	Mutation(s): 0 Gene Names: NME1, NDPKA, NM23 EC: 2.7.4.6
Find proteins for P15531 (Homo sapiens) Explore P15531 Go to UniProtKB: P15531
NIH Common Fund Data Resources
PHAROS: P15531 GTEx: ENSG00000239672
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PO4 Query on PO4 Download Ideal Coordinates CCD File SDF format, chain D [B] SDF format, chain E [B] MOL2 format, chain D [B] MOL2 format, chain E [B]	B	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.242
R-Value Work: 0.224
R-Value Observed: 0.224
Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 154.51	α = 90
b = 154.51	β = 90
c = 111.821	γ = 120

Software Package:

Software Name	Purpose
ADSC	data collection
PHASER	phasing
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2009-12-29
Released Date: 2010-11-10

Deposition Author(s):

Revision History

Version 1.0: 2010-11-10
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.