Download MendeleyCovalent Ubiquitin-Usp5 Complex
Walker, J.R., Avvakumov, G.V., Xue, S., Butler-Cole, C., Weigelt, J., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Dhe-Paganon, S.To be published.
3IHP
Covalent Ubiquitin-Usp5 Complex
- DOI: 10.2210/pdb3IHP/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-07-30 Released: 2009-12-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.276
- R-Value Work: 0.224
- R-Value Observed: 0.227
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ubiquitin carboxyl-terminal hydrolase 5 | A, B | 854 | Homo sapiens | Mutation(s): 0 Gene Names: ISOT, USP5 EC: 3.1.2.15 (PDB Primary Data), 3.4.19.12 (UniProt) |  |
Find proteins for P45974 (Homo sapiens) Explore P45974 Go to UniProtKB: P45974 | |||||
NIH Common Fund Data Resources | |||||
PHAROS: P45974 GTEx: ENSG00000111667 | |||||
Protein Feature ViewExpand | |||||
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Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ubiquitin | C, D | 75 | Homo sapiens | Mutation(s): 0 Gene Names: RPS27A, UBA52, UBA80, UBB, UBC, UBCEP1, UBCEP2 |  |
Find proteins for P0CG48 (Homo sapiens) Explore P0CG48 Go to UniProtKB: P0CG48 | |||||
NIH Common Fund Data Resources | |||||
PHAROS: P0CG48 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | A, B | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| NEH Query on NEH | C, D | ETHANAMINE C2 H7 N QUSNBJAOOMFDIB-UHFFFAOYSA-N |  | Ligand Interaction | |
| CL Query on CL | D | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.80 Å
- R-Value Free: 0.276
- R-Value Work: 0.224
- R-Value Observed: 0.227
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 68.295 | α = 90 |
| b = 188.845 | β = 90 |
| c = 207.86 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| PHASER | phasing |
| REFMAC | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
Entry History
Deposition Data
- Deposited Date: 2009-07-30
- Released Date: 2009-12-29 Deposition Author(s): Walker, J.R., Avvakumov, G.V., Xue, S., Butler-Cole, C., Weigelt, J., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)
