Download MendeleyCrystal structure of human splicing factor dim2
Jin, T.C., Guo, F., Wang, Y.T., Howard, A., Zhang, Y.Z.To be published.
3GIX
Crystal structure of human splicing factor dim2
- DOI: 10.2210/pdb3GIX/pdb
- Classification: SPLICING
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-03-06 Released: 2010-03-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.33 Å
- R-Value Free: 0.197
- R-Value Work: 0.145
- R-Value Observed: 0.147
wwPDB Validation 3D Report Full Report
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thioredoxin-like protein 4B | A, B | 149 | Homo sapiens | Mutation(s): 0 Gene Names: DIM2, DLP, TXNL4B |  |
Find proteins for Q9NX01 (Homo sapiens) Explore Q9NX01 Go to UniProtKB: Q9NX01 | |||||
NIH Common Fund Data Resources | |||||
PHAROS: Q9NX01 GTEx: ENSG00000140830 | |||||
Protein Feature ViewExpand | |||||
| |||||
Oligosaccharides
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
| beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose | C | 2 |  | N/A | Oligosaccharides Interaction |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_900003 Query on PRD_900003 | C | sucrose | Oligosaccharide / Nutrient |  | -- |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.33 Å
- R-Value Free: 0.197
- R-Value Work: 0.145
- R-Value Observed: 0.147
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 39.325 | α = 90 |
| b = 63.64 | β = 92.29 |
| c = 51.148 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Deposited Date: 2009-03-06
- Released Date: 2010-03-16 Deposition Author(s): Jin, T.C., Guo, F., Zhang, Y.Z.
Revision History
- Version 1.0: 2010-03-16
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Advisory, Atomic model, Data collection, Database references, Derived calculations, Non-polymer description, Structure summary
