3EPD

CryoEM structure of poliovirus receptor bound to poliovirus type 3

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history. 


Literature

Crystal structure of CD155 and electron microscopic studies of its complexes with polioviruses.

Zhang, P., Mueller, S., Morais, M.C., Bator, C.M., Bowman, V.D., Hafenstein, S., Wimmer, E., Rossmann, M.G.

(2008) Proc Natl Acad Sci U S A 105: 18284-18289

  • DOI: 10.1073/pnas.0807848105
  • Primary Citation of Related Structures:  
    3URO, 3EPF, 3EPC, 3EPD

  • PubMed Abstract: 

    • When poliovirus (PV) recognizes its receptor, CD155, the virus changes from a 160S to a 135S particle before releasing its genome into the cytoplasm. CD155 is a transmembrane protein with 3 Ig-like extracellular domains, D1-D3, where D1 is recognized by the virus ...

    When poliovirus (PV) recognizes its receptor, CD155, the virus changes from a 160S to a 135S particle before releasing its genome into the cytoplasm. CD155 is a transmembrane protein with 3 Ig-like extracellular domains, D1-D3, where D1 is recognized by the virus. The crystal structure of D1D2 has been determined to 3.5-A resolution and fitted into approximately 8.5-A resolution cryoelectron microscopy reconstructions of the virus-receptor complexes for the 3 PV serotypes. These structures show that, compared with human rhinoviruses, the virus-receptor interactions for PVs have a greater dependence on hydrophobic interactions, as might be required for a virus that can inhabit environments of different pH. The pocket factor was shown to remain in the virus during the first recognition stage. The present structures, when combined with earlier mutational investigations, show that in the subsequent entry stage the receptor moves further into the canyon when at a physiological temperature, thereby expelling the pocket factor and separating the viral subunits to form 135S particles. These results provide a detailed analysis of how a nonenveloped virus can enter its host cell.

    Organizational Affiliation: 

    Department of Biological Sciences, Purdue University, 915 West State Street, West Lafayette, IN 47907-2054, USA.



Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Poliovirus receptor R213Homo sapiensMutation(s): 5 
Gene Names: PVR, PVS
Find proteins for P15151 (Homo sapiens)
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Go to UniProtKB:  P15151
NIH Common Fund Data Resources
PHAROS:  P15151
GTEx:  ENSG00000073008
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Poliovirus Type3 peptide 04N/AMutation(s): 0 
Protein Feature View
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
protein VP1 1279Human poliovirus 3Mutation(s): 0 
Find proteins for A0A0B6VQW0 (Human poliovirus 3)
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Go to UniProtKB:  A0A0B6VQW0
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
protein VP2 2266Human poliovirus 3Mutation(s): 0 
EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt)
Find proteins for P03302 (Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B))
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
protein VP4 468Human poliovirus 3Mutation(s): 0 
EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt)
Find proteins for P03302 (Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B))
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
protein VP3 3235Human poliovirus 3Mutation(s): 0 
EC: 3.4.22.29 (UniProt), 3.6.1.15 (UniProt), 3.4.22.28 (UniProt), 2.7.7.48 (UniProt)
Find proteins for A0A0B4MVN6 (Human poliovirus 3)
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Go to UniProtKB:  A0A0B4MVN6
Protein Feature View
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Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SPH
Query on SPH
Download Ideal Coordinates CCD File 
1
SPHINGOSINE
C18 H37 N O2
WWUZIQQURGPMPG-MSOLQXFVSA-N		 Ligand Interaction
MYR
Query on MYR
Download Ideal Coordinates CCD File 
4
MYRISTIC ACID
C14 H28 O2
TUNFSRHWOTWDNC-UHFFFAOYSA-N		 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-11-11
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2016-05-11
    Changes: Derived calculations
  • Version 1.3: 2018-07-18
    Changes: Data collection
  • Version 1.4: 2018-10-31
    Changes: Data collection, Structure summary