3BVE

Structural basis for the iron uptake mechanism of Helicobacter pylori ferritin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.188 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis for the iron uptake mechanism of Helicobacter pylori ferritin

Kim, K.H.Cho, K.J.Lee, J.H.Shin, H.J.Yang, I.S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Ferritin ABCDEF181Helicobacter pyloriMutation(s): 0 
EC: 1.16.3.1 (PDB Primary Data), 1.16.3.2 (UniProt)
Find proteins for Q9ZLI1 (Helicobacter pylori (strain J99 / ATCC 700824))
Explore Q9ZLI1 
Go to UniProtKB:  Q9ZLI1
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download Ideal Coordinates CCD File 
B, C, F
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.188 
  • Space Group: I 4
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 128.709α = 90
b = 128.709β = 90
c = 165.58γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
CNSphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2009-01-13
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Non-polymer description, Version format compliance