Characteristics of Diiron Site with Large Cavity in Hemerythrin-like Domain of DcrH
Onoda, A., Okamoto, Y., Sugimoto, H., Mizohata, E., Inoue, T., Shiro, Y., Hayashi, T.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Hemerythrin-like domain protein DcrH | 136 | Nitratidesulfovibrio vulgaris | Mutation(s): 0  Gene Names: dcrH | ||
UniProt | |||||
Find proteins for Q726F3 (Desulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / NCIMB 8303 / VKM B-1760 / Hildenborough)) Explore Q726F3  Go to UniProtKB:  Q726F3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q726F3 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CFO Query on CFO | C [auth A], D [auth B] | CHLORO DIIRON-OXO MOIETY Cl Fe2 O KBTPJIQAZMMQJH-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 33.311 | α = 95.27 |
b = 44.873 | β = 104.2 |
c = 48.127 | γ = 90.03 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
SPACE | data collection |
HKL-2000 | data reduction |
HKL-2000 | data scaling |