Download MendeleyCrystal Structure of Hypothetical Methyltransferase TTHA0223 from Thermus thermophilus HB8 complexed with S-adenosylmethionine
Kagawa, W., Kurumizaka, H., Yokoyama, S.To be published.
2YQZ
Crystal Structure of Hypothetical Methyltransferase TTHA0223 from Thermus thermophilus HB8 complexed with S-adenosylmethionine
- DOI: 10.2210/pdb2YQZ/pdb
- Classification: TRANSFERASE
- Organism(s): Thermus thermophilus HB8
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2007-04-01 Released: 2007-10-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.235
- R-Value Work: 0.202
- R-Value Observed: 0.202
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Hypothetical protein TTHA0223 | A, B | 263 | Thermus thermophilus HB8 | Mutation(s): 0 Gene Names: TTHA0223 EC: 2.1.1 |  |
Find proteins for Q5SLS0 (Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)) Explore Q5SLS0 Go to UniProtKB: Q5SLS0 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SAM Query on SAM | A, B | S-ADENOSYLMETHIONINE C15 H22 N6 O5 S MEFKEPWMEQBLKI-FCKMPRQPSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A,B | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.235
- R-Value Work: 0.202
- R-Value Observed: 0.202
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 36.899 | α = 87.03 |
| b = 45.064 | β = 78.96 |
| c = 84.151 | γ = 83.49 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| Rantan | model building |
| CNS | refinement |
| HKL-2000 | data reduction |
| SCALEPACK | data scaling |
| Rantan | phasing |
Entry History
Deposition Data
- Deposited Date: 2007-04-01
- Released Date: 2007-10-02 Deposition Author(s): Kagawa, W., Kurumizaka, H., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
