Macromolecule Content

Total Structure Weight: 62.61 kDa
Atom Count: 3102
Modelled Residue Count: 408
Deposited Residue Count: 536
Unique protein chains: 1

2YPS

Crystal structure of the PX domain of human sorting nexin 3

DOI: 10.2210/pdb2YPS/pdb

Classification: PROTEIN TRANSPORT
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2012-10-31 Released: 2013-03-20
Deposition Author(s): Canning, P., Kiyani, W., Froese, D.S., Krojer, T., Strain-Damerell, C., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Yue, W.W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.255
R-Value Work: 0.211
R-Value Observed: 0.213

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of the Px Domain of Human Sorting Nexin 3

Canning, P., Froese, D.S., Krojer, T., Strain-Damerell, C., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Yue, W.W.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SORTING NEXIN-3	A, B, C, D	134	Homo sapiens	Mutation(s): 0 Gene Names: SNX3
Find proteins for O60493 (Homo sapiens) Explore O60493 Go to UniProtKB: O60493
NIH Common Fund Data Resources
PHAROS: O60493 GTEx: ENSG00000112335
Protein Feature View Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.255
R-Value Work: 0.211
R-Value Observed: 0.213
Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.84	α = 90
b = 81.7	β = 90
c = 184.46	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2012-10-31
Released Date: 2013-03-20

Deposition Author(s):

Strain-Damerell, C.

Arrowsmith, C.H.

Revision History (Full details and data files)

Version 1.0: 2013-03-20
Type: Initial release
Version 1.1: 2018-01-24
Changes: Database references

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.