2PA1

Structure of the PDZ domain of human PDLIM2 bound to a C-terminal extension from human beta-tropomyosin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.192 
  • R-Value Observed: 0.195 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structure of the PDZ domain of human PDLIM2 bound to a C-terminal extension from human beta-tropomyosin.

Uppenberg, J.Shrestha, L.Elkins, J.Burgess-Brown, N.Salah, E.Bunkoczi, G.Papagrigoriou, E.Pike, A.C.W.Turnbull, A.P.Ugochukwu, E.Umeano, C.von Delft, F.Weigelt, J.Arrowsmith, C.H.Edwards, A.Sundstrom, M.Doyle, D.A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
PDZ and LIM domain protein 2A87Homo sapiensMutation(s): 0 
Gene Names: PDLIM2PP6345
Find proteins for Q96JY6 (Homo sapiens)
Explore Q96JY6 
Go to UniProtKB:  Q96JY6
NIH Common Fund Data Resources
PHAROS  Q96JY6
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download Ideal Coordinates CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.70 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.192 
  • R-Value Observed: 0.195 
  • Space Group: P 61
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 58.77α = 90
b = 58.77β = 90
c = 52.34γ = 120
Software Package:
Software NamePurpose
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345data collection
XDSdata reduction
XDSdata scaling

Structure Validation

View Full Validation Report



Entry History 

Revision History 

  • Version 1.0: 2007-05-01
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.3: 2017-10-18
    Changes: Refinement description