Macromolecule Content

• Total Structure Weight: 5.74 kDa 
• Atom Count: 403 
• Residue Count: 52 
• Unique protein chains: 1

2K0B

NMR structure of the UBA domain of p62 (SQSTM1)

• DOI: 10.2210/pdb2K0B/pdb
• BMRB: 15591

• Classification: SIGNALING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2008-01-31 Released: 2008-02-19 
• Deposition Author(s): Long, J.E., Ciani, B., Gallagher, T.R.A., Cavey, J.R., Sheppard, P.W., Layfield, R., Searle, M.S.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 30 
• Selection Criteria: structures with the lowest energy 

Literature

Conformation and dynamics of the three-helix bundle UBA domain of p62 from experiment and simulation.

Evans, C.L., Long, J.E., Gallagher, T.R., Hirst, J.D., Searle, M.S.

(2007) Proteins 71: 227-240

• PubMed: 17932931 
• DOI: 10.1002/prot.21692
• Primary Citation of Related Structures:  
  2K0B


• PubMed Abstract: 
  

The ubiquitin associated domain of p62 is a small three-helix bundle of approximately 50 residues that mediates the recognition of polyubiquitin chains and ubiquitylated substrates. The solution structure of a 52 residue construct containing this domain has been characterized using heteronuclear nuclear magnetic resonance (NMR) methods. The resulting ensemble of NMR-derived structures was used in molecular dynamics (MD) simulations to investigate the equilibrium conformation and dynamics of this domain. NOE and (15)N relaxation data have been used to validate the structural ensemble produced by the MD simulations and show a good correlation for residues in regions of secondary structure. A similar approach was taken using an ensemble of structures from the MD simulations to calculate electronic circular dichroism (CD) and IR spectra from first principles with an encouraging correlation with the experimental CD and IR data.

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Organizational Affiliation: 

School of Chemistry, University Park, University of Nottingham, Nottingham NG7 2RD, United Kingdom.

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sequestosome-1	X	52	Homo sapiens	Mutation(s): 0  Gene Names: SQSTM1, ORCA, OSIL
Find proteins for Q13501 (Homo sapiens) Explore Q13501  Go to UniProtKB:  Q13501
NIH Common Fund Data Resources
PHAROS:  Q13501 GTEx:  ENSG00000161011

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 30 
• Selection Criteria: structures with the lowest energy 
• OLDERADO: 2K0B Olderado

Structure Validation

Entry History 

Deposition Data

• Deposited Date: 2008-01-31 
• Released Date: 2008-02-19 
Deposition Author(s): Long, J.E., Ciani, B., Gallagher, T.R.A., Cavey, J.R., Sheppard, P.W., Layfield, R., Searle, M.S.

Revision History 

• Version 1.0: 2008-02-19
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance