2HSG

Structure of transcription regulator CcpA in its DNA-free state


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.337 
  • R-Value Work: 0.271 
  • R-Value Observed: 0.281 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of full-length transcription regulator CcpA in the apo form.

Loll, B.Saenger, W.Biesiadka, J.

(2007) Biochim Biophys Acta 1774: 732-736

  • DOI: 10.1016/j.bbapap.2007.03.020
  • Structures With Same Primary Citation

  • PubMed Abstract: 
  • The catabolite control protein A (CcpA) from Bacillus megaterium is a member of the bacterial repressor protein family GalR-LacI. CcpA functions as master transcriptional regulator of carbon catabolite repression/regulation in firmicutes. Here we pre ...

    The catabolite control protein A (CcpA) from Bacillus megaterium is a member of the bacterial repressor protein family GalR-LacI. CcpA functions as master transcriptional regulator of carbon catabolite repression/regulation in firmicutes. Here we present the crystal structure of full-length apo CcpA at 2.5 A resolution from B. megaterium. The structure reveals the location of the helix-turn-helix domain as well as the hinge region, which were not visible due to their high flexibility in earlier crystallographic studies on CcpA molecules. The structure of the apo CcpA homodimer in the present form is in contrast to other reported structures for CcpA.


    Organizational Affiliation

    Institute for Chemistry and Biochemistry/Crystallography, Freie Universität Berlin, Takustrasse 6, D-14195 Berlin, Germany. Bernard.Loll@mpimf-heidelberg.mpg.de



Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Glucose-resistance amylase regulatorA332Bacillus megateriumMutation(s): 0 
Gene Names: ccpA
Find proteins for P46828 (Bacillus megaterium)
Explore P46828 
Go to UniProtKB:  P46828
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.337 
  • R-Value Work: 0.271 
  • R-Value Observed: 0.281 
  • Space Group: P 61 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 74.464α = 90
b = 74.464β = 90
c = 238.923γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2007-06-05
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance