Macromolecule Content

Total Structure Weight: 132.86 kDa
Atom Count: 8546
Residue Count: 1100
Unique protein chains: 1

2F4L

Crystal structure of a putative acetamidase (tm0119) from thermotoga maritima msb8 at 2.50 A resolution

DOI: 10.2210/pdb2F4L/pdb

Classification: HYDROLASE
Organism(s): Thermotoga maritima MSB8
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2005-11-23 Released: 2005-12-06
Deposition Author(s): Joint Center for Structural Genomics (JCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.242
R-Value Work: 0.192

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of Acetamidase, putative (tm0119) from THERMOTOGA MARITIMA at 2.50 A resolution

Joint Center for Structural Genomics (JCSG)

To be published.

Macromolecules

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(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
acetamidase, putative	A, B, C, D	297	Thermotoga maritima MSB8	Mutation(s): 7 Gene Names: tm0119, TM_0119
Find proteins for Q9WXX3 (Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)) Explore Q9WXX3 Go to UniProtKB: Q9WXX3
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain E [A] SDF format, chain F [A] SDF format, chain G [B] SDF format, chain H [B] SDF format, chain J [C] SDF format, chain K [C] SDF format, chain L [D] SDF format, chain M [D] MOL2 format, chain E [A] MOL2 format, chain F [A] MOL2 format, chain G [B] MOL2 format, chain H [B] MOL2 format, chain J [C] MOL2 format, chain K [C] MOL2 format, chain L [D] MOL2 format, chain M [D]	A, B, C, D	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Ligand Interaction
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain I [B] SDF format, chain N [D] MOL2 format, chain I [B] MOL2 format, chain N [D]	B, D	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Ligand Interaction

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A,B,C,D	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.242
R-Value Work: 0.192
Space Group: P 2₁ 2₁ 2₁
Diffraction Data DOI: 10.18430/M32F4L Protein Diffraction

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.257	α = 90
b = 104.068	β = 90
c = 154.945	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SCALA	data scaling
PDB_EXTRACT	data extraction
MOSFLM	data reduction
CCP4	data scaling
SHELXE	model building
SHARP	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2005-11-23
Released Date: 2005-12-06

Deposition Author(s):

Joint Center for Structural Genomics (JCSG)

Revision History

Version 1.0: 2005-12-06
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Advisory, Source and taxonomy, Version format compliance

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