2D4G

Structure of YjcG protein, a putative 2'-5' RNA ligase from Bacillus subtilis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.224 

wwPDB Validation 3D Report Full Report


This is version 1.4 of the entry. See complete history

Literature

Crystal structure of B. subtilis YjcG characterizing the YjcG-like group of 2H phosphoesterase superfamily.

Li, D.Liu, C.Liang, Y.H.Li, L.F.Su, X.D.

(2008) Proteins 72: 1071-1076


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
hypothetical protein BSU11850
A, B
171Bacillus subtilis (strain 168)Mutation(s): 0 
Gene Names: yjcG
EC: 3.1.-.-
Find proteins for O31629 (Bacillus subtilis (strain 168))
Go to UniProtKB:  O31629
Small Molecules
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.224 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 99.660α = 90.00
b = 73.930β = 113.56
c = 61.770γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
RESOLVEphasing
CNSrefinement
SOLVEphasing
MAR345data collection
SCALEPACKdata scaling
DENZOdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2006-10-17
    Type: Initial release
  • Version 1.1: 2008-04-30
    Type: Version format compliance
  • Version 1.2: 2011-07-13
    Type: Version format compliance
  • Version 1.3: 2013-11-27
    Type: Database references
  • Version 1.4: 2017-10-11
    Type: Refinement description