Macromolecule Content

Total Structure Weight: 103.86 kDa
Atom Count: 7353
Residue Count: 833
Unique protein chains: 1

1ZTC

Crystal structure of a putative metallo-beta-lactamase (tm0894) from Thermotoga maritima at 2.10 A resolution

DOI: 10.2210/pdb1ZTC/pdb

Classification: HYDROLASE
Organism(s): Thermotoga maritima
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2005-05-26 Released: 2005-06-28
Deposition Author(s): Joint Center for Structural Genomics (JCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.178
R-Value Work: 0.157
R-Value Observed: 0.159

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of hypothetical protein (tm0894) from Thermotoga maritima at 2.10 A resolution

Joint Center for Structural Genomics (JCSG)

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hypothetical protein TM0894	A, B, C, D	221	Thermotoga maritima	Mutation(s): 2 Gene Names: tm0894
Find proteins for Q9WZZ6 (Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)) Explore Q9WZZ6 Go to UniProtKB: Q9WZZ6
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MPD Query on MPD Download Ideal Coordinates CCD File SDF format, chain H [A] SDF format, chain I [A] SDF format, chain M [B] SDF format, chain Q [C] SDF format, chain V [D] MOL2 format, chain H [A] MOL2 format, chain I [A] MOL2 format, chain M [B] MOL2 format, chain Q [C] MOL2 format, chain V [D]	A, B, C, D	(4S)-2-METHYL-2,4-PENTANEDIOL C₆ H₁₄ O₂ SVTBMSDMJJWYQN-YFKPBYRVSA-N		Ligand Interaction
PO4 Query on PO4 Download Ideal Coordinates CCD File SDF format, chain G [A] SDF format, chain L [B] SDF format, chain P [C] SDF format, chain T [D] SDF format, chain U [D] MOL2 format, chain G [A] MOL2 format, chain L [B] MOL2 format, chain P [C] MOL2 format, chain T [D] MOL2 format, chain U [D]	A, B, C, D	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Ligand Interaction
NI Query on NI Download Ideal Coordinates CCD File SDF format, chain E [A] SDF format, chain F [A] SDF format, chain J [B] SDF format, chain K [B] SDF format, chain N [C] SDF format, chain O [C] SDF format, chain R [D] SDF format, chain S [D] MOL2 format, chain E [A] MOL2 format, chain F [A] MOL2 format, chain J [B] MOL2 format, chain K [B] MOL2 format, chain N [C] MOL2 format, chain O [C] MOL2 format, chain R [D] MOL2 format, chain S [D]	A, B, C, D	NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N		Ligand Interaction

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A,B,C,D	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.178
R-Value Work: 0.157
R-Value Observed: 0.159
Space Group: P 2₁ 2₁ 2₁
Diffraction Data DOI: 10.18430/M31ZTC Protein Diffraction

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 89.783	α = 90
b = 127.343	β = 90
c = 152.224	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SCALA	data scaling
MOSFLM	data reduction
CCP4	data scaling
SOLVE	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2005-05-26
Released Date: 2005-06-28

Deposition Author(s):

Joint Center for Structural Genomics (JCSG)

Revision History

Version 1.0: 2005-06-28
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance
Version 1.3: 2017-10-11
Changes: Refinement description

Prepare Data

Validate Data

Deposit Data

Deposition Help & Resources

174014 Biological Macromolecular Structures Enabling Breakthroughs in Research and Education